Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4053 and Pf6N2E2_4054 are separated by 239 nucleotides Pf6N2E2_4054 and Pf6N2E2_4055 are separated by 150 nucleotides Pf6N2E2_4055 and Pf6N2E2_4056 are separated by 6 nucleotides Pf6N2E2_4056 and Pf6N2E2_4057 are separated by 39 nucleotides
Pf6N2E2_4053 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 4,732,254 to 4,733,255
_4053
Pf6N2E2_4054 - Osmotically inducible protein C, at 4,733,495 to 4,733,926
_4054
Pf6N2E2_4055 - FIG00955509: hypothetical protein, at 4,734,077 to 4,734,310
_4055
Pf6N2E2_4056 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 4,734,317 to 4,734,742
_4056
Pf6N2E2_4057 - lipoprotein, putative, at 4,734,782 to 4,735,195
_4057
Position (kb)
4733
4734 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4732.526 kb on - strand, within Pf6N2E2_4053 at 4732.526 kb on - strand, within Pf6N2E2_4053 at 4732.526 kb on - strand, within Pf6N2E2_4053 at 4732.526 kb on - strand, within Pf6N2E2_4053 at 4732.543 kb on + strand, within Pf6N2E2_4053 at 4732.562 kb on + strand, within Pf6N2E2_4053 at 4732.597 kb on + strand, within Pf6N2E2_4053 at 4732.597 kb on + strand, within Pf6N2E2_4053 at 4732.597 kb on + strand, within Pf6N2E2_4053 at 4732.597 kb on + strand, within Pf6N2E2_4053 at 4732.597 kb on + strand, within Pf6N2E2_4053 at 4732.597 kb on + strand, within Pf6N2E2_4053 at 4732.597 kb on + strand, within Pf6N2E2_4053 at 4732.597 kb on + strand, within Pf6N2E2_4053 at 4732.597 kb on + strand, within Pf6N2E2_4053 at 4732.597 kb on + strand, within Pf6N2E2_4053 at 4732.597 kb on + strand, within Pf6N2E2_4053 at 4732.597 kb on + strand, within Pf6N2E2_4053 at 4732.597 kb on + strand, within Pf6N2E2_4053 at 4732.597 kb on + strand, within Pf6N2E2_4053 at 4732.597 kb on + strand, within Pf6N2E2_4053 at 4732.598 kb on - strand, within Pf6N2E2_4053 at 4732.598 kb on - strand, within Pf6N2E2_4053 at 4732.598 kb on - strand, within Pf6N2E2_4053 at 4732.598 kb on - strand, within Pf6N2E2_4053 at 4732.598 kb on - strand, within Pf6N2E2_4053 at 4732.598 kb on - strand, within Pf6N2E2_4053 at 4732.598 kb on - strand, within Pf6N2E2_4053 at 4732.598 kb on - strand, within Pf6N2E2_4053 at 4732.598 kb on - strand, within Pf6N2E2_4053 at 4732.598 kb on - strand, within Pf6N2E2_4053 at 4732.598 kb on - strand, within Pf6N2E2_4053 at 4732.598 kb on - strand, within Pf6N2E2_4053 at 4732.598 kb on - strand, within Pf6N2E2_4053 at 4732.598 kb on - strand, within Pf6N2E2_4053 at 4732.639 kb on + strand, within Pf6N2E2_4053 at 4732.663 kb on + strand, within Pf6N2E2_4053 at 4732.664 kb on - strand, within Pf6N2E2_4053 at 4732.664 kb on - strand, within Pf6N2E2_4053 at 4733.057 kb on - strand, within Pf6N2E2_4053 at 4733.057 kb on - strand, within Pf6N2E2_4053 at 4733.129 kb on + strand, within Pf6N2E2_4053 at 4733.129 kb on + strand, within Pf6N2E2_4053 at 4733.130 kb on - strand, within Pf6N2E2_4053 at 4733.132 kb on - strand, within Pf6N2E2_4053 at 4733.137 kb on + strand, within Pf6N2E2_4053 at 4733.137 kb on + strand, within Pf6N2E2_4053 at 4733.138 kb on - strand, within Pf6N2E2_4053 at 4733.314 kb on + strand at 4733.315 kb on - strand at 4733.315 kb on - strand at 4733.342 kb on + strand at 4733.342 kb on + strand at 4733.342 kb on + strand at 4733.342 kb on + strand at 4733.342 kb on + strand at 4733.342 kb on + strand at 4733.342 kb on + strand at 4733.342 kb on + strand at 4733.342 kb on + strand at 4733.343 kb on - strand at 4733.343 kb on - strand at 4733.343 kb on - strand at 4733.344 kb on + strand at 4733.358 kb on + strand at 4733.358 kb on + strand at 4733.358 kb on + strand at 4733.358 kb on + strand at 4733.358 kb on + strand at 4733.359 kb on - strand at 4733.359 kb on - strand at 4733.424 kb on + strand at 4733.424 kb on + strand at 4733.445 kb on + strand at 4733.446 kb on - strand at 4733.501 kb on - strand at 4733.501 kb on - strand at 4733.594 kb on + strand, within Pf6N2E2_4054 at 4733.595 kb on - strand, within Pf6N2E2_4054 at 4733.964 kb on - strand at 4733.984 kb on - strand at 4734.012 kb on + strand at 4734.012 kb on + strand at 4734.012 kb on + strand at 4734.013 kb on - strand at 4734.013 kb on - strand at 4734.013 kb on - strand at 4734.191 kb on - strand, within Pf6N2E2_4055 at 4734.191 kb on - strand, within Pf6N2E2_4055 at 4734.195 kb on + strand, within Pf6N2E2_4055 at 4734.195 kb on + strand, within Pf6N2E2_4055 at 4734.195 kb on + strand, within Pf6N2E2_4055 at 4734.195 kb on + strand, within Pf6N2E2_4055 at 4734.196 kb on - strand, within Pf6N2E2_4055 at 4734.203 kb on + strand, within Pf6N2E2_4055 at 4734.203 kb on + strand, within Pf6N2E2_4055 at 4734.204 kb on - strand, within Pf6N2E2_4055 at 4734.204 kb on - strand, within Pf6N2E2_4055 at 4734.204 kb on - strand, within Pf6N2E2_4055 at 4734.204 kb on - strand, within Pf6N2E2_4055 at 4734.290 kb on + strand at 4734.290 kb on + strand at 4734.290 kb on + strand at 4734.290 kb on + strand at 4734.291 kb on - strand at 4734.291 kb on - strand at 4734.291 kb on - strand at 4734.308 kb on + strand at 4734.372 kb on + strand, within Pf6N2E2_4056 at 4734.372 kb on + strand, within Pf6N2E2_4056 at 4734.372 kb on + strand, within Pf6N2E2_4056 at 4734.372 kb on + strand, within Pf6N2E2_4056 at 4734.373 kb on - strand, within Pf6N2E2_4056 at 4734.447 kb on + strand, within Pf6N2E2_4056 at 4734.462 kb on + strand, within Pf6N2E2_4056 at 4734.462 kb on + strand, within Pf6N2E2_4056 at 4734.462 kb on + strand, within Pf6N2E2_4056 at 4734.462 kb on + strand, within Pf6N2E2_4056 at 4734.462 kb on + strand, within Pf6N2E2_4056 at 4734.462 kb on + strand, within Pf6N2E2_4056 at 4734.463 kb on - strand, within Pf6N2E2_4056 at 4734.463 kb on - strand, within Pf6N2E2_4056 at 4734.463 kb on - strand, within Pf6N2E2_4056 at 4734.463 kb on - strand, within Pf6N2E2_4056 at 4734.463 kb on - strand, within Pf6N2E2_4056 at 4734.463 kb on - strand, within Pf6N2E2_4056 at 4734.463 kb on - strand, within Pf6N2E2_4056 at 4734.463 kb on - strand, within Pf6N2E2_4056 at 4734.463 kb on - strand, within Pf6N2E2_4056 at 4734.512 kb on - strand, within Pf6N2E2_4056 at 4734.722 kb on + strand at 4734.734 kb on + strand at 4734.734 kb on + strand at 4734.734 kb on + strand at 4734.809 kb on - strand at 4734.840 kb on + strand, within Pf6N2E2_4057
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 4,732,526 - Pf6N2E2_4053 0.27 +0.1 4,732,526 - Pf6N2E2_4053 0.27 +0.1 4,732,526 - Pf6N2E2_4053 0.27 -0.2 4,732,526 - Pf6N2E2_4053 0.27 -1.5 4,732,543 + Pf6N2E2_4053 0.29 +2.1 4,732,562 + Pf6N2E2_4053 0.31 +1.2 4,732,597 + Pf6N2E2_4053 0.34 +0.6 4,732,597 + Pf6N2E2_4053 0.34 -0.3 4,732,597 + Pf6N2E2_4053 0.34 -0.4 4,732,597 + Pf6N2E2_4053 0.34 +0.2 4,732,597 + Pf6N2E2_4053 0.34 +0.9 4,732,597 + Pf6N2E2_4053 0.34 -0.6 4,732,597 + Pf6N2E2_4053 0.34 +1.1 4,732,597 + Pf6N2E2_4053 0.34 -0.7 4,732,597 + Pf6N2E2_4053 0.34 -0.4 4,732,597 + Pf6N2E2_4053 0.34 -1.5 4,732,597 + Pf6N2E2_4053 0.34 +0.4 4,732,597 + Pf6N2E2_4053 0.34 +0.9 4,732,597 + Pf6N2E2_4053 0.34 +0.3 4,732,597 + Pf6N2E2_4053 0.34 -0.7 4,732,597 + Pf6N2E2_4053 0.34 +0.7 4,732,598 - Pf6N2E2_4053 0.34 +2.1 4,732,598 - Pf6N2E2_4053 0.34 +0.2 4,732,598 - Pf6N2E2_4053 0.34 +0.0 4,732,598 - Pf6N2E2_4053 0.34 +0.1 4,732,598 - Pf6N2E2_4053 0.34 +0.5 4,732,598 - Pf6N2E2_4053 0.34 -1.9 4,732,598 - Pf6N2E2_4053 0.34 +0.5 4,732,598 - Pf6N2E2_4053 0.34 -0.8 4,732,598 - Pf6N2E2_4053 0.34 +0.5 4,732,598 - Pf6N2E2_4053 0.34 +0.2 4,732,598 - Pf6N2E2_4053 0.34 -0.4 4,732,598 - Pf6N2E2_4053 0.34 -0.7 4,732,598 - Pf6N2E2_4053 0.34 +0.7 4,732,598 - Pf6N2E2_4053 0.34 +0.4 4,732,639 + Pf6N2E2_4053 0.38 +0.1 4,732,663 + Pf6N2E2_4053 0.41 +0.1 4,732,664 - Pf6N2E2_4053 0.41 +0.1 4,732,664 - Pf6N2E2_4053 0.41 +0.4 4,733,057 - Pf6N2E2_4053 0.80 +1.1 4,733,057 - Pf6N2E2_4053 0.80 -0.3 4,733,129 + Pf6N2E2_4053 0.87 +0.5 4,733,129 + Pf6N2E2_4053 0.87 -0.5 4,733,130 - Pf6N2E2_4053 0.87 +0.4 4,733,132 - Pf6N2E2_4053 0.88 -2.4 4,733,137 + Pf6N2E2_4053 0.88 -0.2 4,733,137 + Pf6N2E2_4053 0.88 +0.5 4,733,138 - Pf6N2E2_4053 0.88 -1.6 4,733,314 + +0.7 4,733,315 - +0.3 4,733,315 - -1.9 4,733,342 + -2.0 4,733,342 + -0.8 4,733,342 + +0.0 4,733,342 + +0.1 4,733,342 + +0.1 4,733,342 + +0.9 4,733,342 + +0.1 4,733,342 + +0.1 4,733,342 + -1.6 4,733,343 - -0.5 4,733,343 - -1.0 4,733,343 - +0.2 4,733,344 + +0.8 4,733,358 + +0.5 4,733,358 + +0.2 4,733,358 + -0.2 4,733,358 + +0.0 4,733,358 + +0.5 4,733,359 - -1.6 4,733,359 - +1.1 4,733,424 + -0.7 4,733,424 + +1.1 4,733,445 + +1.1 4,733,446 - -0.7 4,733,501 - +2.1 4,733,501 - +0.3 4,733,594 + Pf6N2E2_4054 0.23 -1.5 4,733,595 - Pf6N2E2_4054 0.23 -3.0 4,733,964 - -1.9 4,733,984 - -0.5 4,734,012 + -1.1 4,734,012 + +1.3 4,734,012 + +1.1 4,734,013 - -1.4 4,734,013 - -0.5 4,734,013 - +0.5 4,734,191 - Pf6N2E2_4055 0.49 -0.3 4,734,191 - Pf6N2E2_4055 0.49 +1.1 4,734,195 + Pf6N2E2_4055 0.50 +0.3 4,734,195 + Pf6N2E2_4055 0.50 -0.2 4,734,195 + Pf6N2E2_4055 0.50 +0.5 4,734,195 + Pf6N2E2_4055 0.50 +1.3 4,734,196 - Pf6N2E2_4055 0.51 -0.3 4,734,203 + Pf6N2E2_4055 0.54 -0.8 4,734,203 + Pf6N2E2_4055 0.54 -0.9 4,734,204 - Pf6N2E2_4055 0.54 -0.5 4,734,204 - Pf6N2E2_4055 0.54 +2.1 4,734,204 - Pf6N2E2_4055 0.54 +0.6 4,734,204 - Pf6N2E2_4055 0.54 +0.2 4,734,290 + +0.4 4,734,290 + -1.2 4,734,290 + -0.5 4,734,290 + -0.5 4,734,291 - +1.7 4,734,291 - +1.1 4,734,291 - +0.5 4,734,308 + +0.5 4,734,372 + Pf6N2E2_4056 0.13 -0.5 4,734,372 + Pf6N2E2_4056 0.13 -1.3 4,734,372 + Pf6N2E2_4056 0.13 -1.1 4,734,372 + Pf6N2E2_4056 0.13 -0.6 4,734,373 - Pf6N2E2_4056 0.13 +0.0 4,734,447 + Pf6N2E2_4056 0.31 -1.4 4,734,462 + Pf6N2E2_4056 0.34 -0.4 4,734,462 + Pf6N2E2_4056 0.34 -0.9 4,734,462 + Pf6N2E2_4056 0.34 -0.6 4,734,462 + Pf6N2E2_4056 0.34 -0.5 4,734,462 + Pf6N2E2_4056 0.34 -1.0 4,734,462 + Pf6N2E2_4056 0.34 -0.9 4,734,463 - Pf6N2E2_4056 0.34 +0.5 4,734,463 - Pf6N2E2_4056 0.34 +0.4 4,734,463 - Pf6N2E2_4056 0.34 -1.1 4,734,463 - Pf6N2E2_4056 0.34 +0.5 4,734,463 - Pf6N2E2_4056 0.34 +2.1 4,734,463 - Pf6N2E2_4056 0.34 -1.6 4,734,463 - Pf6N2E2_4056 0.34 -0.5 4,734,463 - Pf6N2E2_4056 0.34 +0.6 4,734,463 - Pf6N2E2_4056 0.34 +0.4 4,734,512 - Pf6N2E2_4056 0.46 -0.2 4,734,722 + -0.6 4,734,734 + -0.5 4,734,734 + +1.1 4,734,734 + +0.0 4,734,809 - +0.1 4,734,840 + Pf6N2E2_4057 0.14 +0.1
Or see this region's nucleotide sequence