Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4054

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4053 and Pf6N2E2_4054 are separated by 239 nucleotidesPf6N2E2_4054 and Pf6N2E2_4055 are separated by 150 nucleotidesPf6N2E2_4055 and Pf6N2E2_4056 are separated by 6 nucleotidesPf6N2E2_4056 and Pf6N2E2_4057 are separated by 39 nucleotides Pf6N2E2_4053 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 4,732,254 to 4,733,255 _4053 Pf6N2E2_4054 - Osmotically inducible protein C, at 4,733,495 to 4,733,926 _4054 Pf6N2E2_4055 - FIG00955509: hypothetical protein, at 4,734,077 to 4,734,310 _4055 Pf6N2E2_4056 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 4,734,317 to 4,734,742 _4056 Pf6N2E2_4057 - lipoprotein, putative, at 4,734,782 to 4,735,195 _4057 Position (kb) 4733 4734Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4732.526 kb on - strand, within Pf6N2E2_4053at 4732.526 kb on - strand, within Pf6N2E2_4053at 4732.526 kb on - strand, within Pf6N2E2_4053at 4732.526 kb on - strand, within Pf6N2E2_4053at 4732.543 kb on + strand, within Pf6N2E2_4053at 4732.562 kb on + strand, within Pf6N2E2_4053at 4732.597 kb on + strand, within Pf6N2E2_4053at 4732.597 kb on + strand, within Pf6N2E2_4053at 4732.597 kb on + strand, within Pf6N2E2_4053at 4732.597 kb on + strand, within Pf6N2E2_4053at 4732.597 kb on + strand, within Pf6N2E2_4053at 4732.597 kb on + strand, within Pf6N2E2_4053at 4732.597 kb on + strand, within Pf6N2E2_4053at 4732.597 kb on + strand, within Pf6N2E2_4053at 4732.597 kb on + strand, within Pf6N2E2_4053at 4732.597 kb on + strand, within Pf6N2E2_4053at 4732.597 kb on + strand, within Pf6N2E2_4053at 4732.597 kb on + strand, within Pf6N2E2_4053at 4732.597 kb on + strand, within Pf6N2E2_4053at 4732.597 kb on + strand, within Pf6N2E2_4053at 4732.597 kb on + strand, within Pf6N2E2_4053at 4732.598 kb on - strand, within Pf6N2E2_4053at 4732.598 kb on - strand, within Pf6N2E2_4053at 4732.598 kb on - strand, within Pf6N2E2_4053at 4732.598 kb on - strand, within Pf6N2E2_4053at 4732.598 kb on - strand, within Pf6N2E2_4053at 4732.598 kb on - strand, within Pf6N2E2_4053at 4732.598 kb on - strand, within Pf6N2E2_4053at 4732.598 kb on - strand, within Pf6N2E2_4053at 4732.598 kb on - strand, within Pf6N2E2_4053at 4732.598 kb on - strand, within Pf6N2E2_4053at 4732.598 kb on - strand, within Pf6N2E2_4053at 4732.598 kb on - strand, within Pf6N2E2_4053at 4732.598 kb on - strand, within Pf6N2E2_4053at 4732.598 kb on - strand, within Pf6N2E2_4053at 4732.639 kb on + strand, within Pf6N2E2_4053at 4732.663 kb on + strand, within Pf6N2E2_4053at 4732.664 kb on - strand, within Pf6N2E2_4053at 4732.664 kb on - strand, within Pf6N2E2_4053at 4733.057 kb on - strand, within Pf6N2E2_4053at 4733.057 kb on - strand, within Pf6N2E2_4053at 4733.129 kb on + strand, within Pf6N2E2_4053at 4733.129 kb on + strand, within Pf6N2E2_4053at 4733.130 kb on - strand, within Pf6N2E2_4053at 4733.132 kb on - strand, within Pf6N2E2_4053at 4733.137 kb on + strand, within Pf6N2E2_4053at 4733.137 kb on + strand, within Pf6N2E2_4053at 4733.138 kb on - strand, within Pf6N2E2_4053at 4733.314 kb on + strandat 4733.315 kb on - strandat 4733.315 kb on - strandat 4733.342 kb on + strandat 4733.342 kb on + strandat 4733.342 kb on + strandat 4733.342 kb on + strandat 4733.342 kb on + strandat 4733.342 kb on + strandat 4733.342 kb on + strandat 4733.342 kb on + strandat 4733.342 kb on + strandat 4733.343 kb on - strandat 4733.343 kb on - strandat 4733.343 kb on - strandat 4733.344 kb on + strandat 4733.358 kb on + strandat 4733.358 kb on + strandat 4733.358 kb on + strandat 4733.358 kb on + strandat 4733.358 kb on + strandat 4733.359 kb on - strandat 4733.359 kb on - strandat 4733.424 kb on + strandat 4733.424 kb on + strandat 4733.445 kb on + strandat 4733.446 kb on - strandat 4733.501 kb on - strandat 4733.501 kb on - strandat 4733.594 kb on + strand, within Pf6N2E2_4054at 4733.595 kb on - strand, within Pf6N2E2_4054at 4733.964 kb on - strandat 4733.984 kb on - strandat 4734.012 kb on + strandat 4734.012 kb on + strandat 4734.012 kb on + strandat 4734.013 kb on - strandat 4734.013 kb on - strandat 4734.013 kb on - strandat 4734.191 kb on - strand, within Pf6N2E2_4055at 4734.191 kb on - strand, within Pf6N2E2_4055at 4734.195 kb on + strand, within Pf6N2E2_4055at 4734.195 kb on + strand, within Pf6N2E2_4055at 4734.195 kb on + strand, within Pf6N2E2_4055at 4734.195 kb on + strand, within Pf6N2E2_4055at 4734.196 kb on - strand, within Pf6N2E2_4055at 4734.203 kb on + strand, within Pf6N2E2_4055at 4734.203 kb on + strand, within Pf6N2E2_4055at 4734.204 kb on - strand, within Pf6N2E2_4055at 4734.204 kb on - strand, within Pf6N2E2_4055at 4734.204 kb on - strand, within Pf6N2E2_4055at 4734.204 kb on - strand, within Pf6N2E2_4055at 4734.290 kb on + strandat 4734.290 kb on + strandat 4734.290 kb on + strandat 4734.290 kb on + strandat 4734.291 kb on - strandat 4734.291 kb on - strandat 4734.291 kb on - strandat 4734.308 kb on + strandat 4734.372 kb on + strand, within Pf6N2E2_4056at 4734.372 kb on + strand, within Pf6N2E2_4056at 4734.372 kb on + strand, within Pf6N2E2_4056at 4734.372 kb on + strand, within Pf6N2E2_4056at 4734.373 kb on - strand, within Pf6N2E2_4056at 4734.447 kb on + strand, within Pf6N2E2_4056at 4734.462 kb on + strand, within Pf6N2E2_4056at 4734.462 kb on + strand, within Pf6N2E2_4056at 4734.462 kb on + strand, within Pf6N2E2_4056at 4734.462 kb on + strand, within Pf6N2E2_4056at 4734.462 kb on + strand, within Pf6N2E2_4056at 4734.462 kb on + strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.463 kb on - strand, within Pf6N2E2_4056at 4734.512 kb on - strand, within Pf6N2E2_4056at 4734.722 kb on + strandat 4734.734 kb on + strandat 4734.734 kb on + strandat 4734.734 kb on + strandat 4734.809 kb on - strandat 4734.840 kb on + strand, within Pf6N2E2_4057

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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4,732,526 - Pf6N2E2_4053 0.27 +0.1
4,732,526 - Pf6N2E2_4053 0.27 +0.1
4,732,526 - Pf6N2E2_4053 0.27 -0.2
4,732,526 - Pf6N2E2_4053 0.27 -1.5
4,732,543 + Pf6N2E2_4053 0.29 +2.1
4,732,562 + Pf6N2E2_4053 0.31 +1.2
4,732,597 + Pf6N2E2_4053 0.34 +0.6
4,732,597 + Pf6N2E2_4053 0.34 -0.3
4,732,597 + Pf6N2E2_4053 0.34 -0.4
4,732,597 + Pf6N2E2_4053 0.34 +0.2
4,732,597 + Pf6N2E2_4053 0.34 +0.9
4,732,597 + Pf6N2E2_4053 0.34 -0.6
4,732,597 + Pf6N2E2_4053 0.34 +1.1
4,732,597 + Pf6N2E2_4053 0.34 -0.7
4,732,597 + Pf6N2E2_4053 0.34 -0.4
4,732,597 + Pf6N2E2_4053 0.34 -1.5
4,732,597 + Pf6N2E2_4053 0.34 +0.4
4,732,597 + Pf6N2E2_4053 0.34 +0.9
4,732,597 + Pf6N2E2_4053 0.34 +0.3
4,732,597 + Pf6N2E2_4053 0.34 -0.7
4,732,597 + Pf6N2E2_4053 0.34 +0.7
4,732,598 - Pf6N2E2_4053 0.34 +2.1
4,732,598 - Pf6N2E2_4053 0.34 +0.2
4,732,598 - Pf6N2E2_4053 0.34 +0.0
4,732,598 - Pf6N2E2_4053 0.34 +0.1
4,732,598 - Pf6N2E2_4053 0.34 +0.5
4,732,598 - Pf6N2E2_4053 0.34 -1.9
4,732,598 - Pf6N2E2_4053 0.34 +0.5
4,732,598 - Pf6N2E2_4053 0.34 -0.8
4,732,598 - Pf6N2E2_4053 0.34 +0.5
4,732,598 - Pf6N2E2_4053 0.34 +0.2
4,732,598 - Pf6N2E2_4053 0.34 -0.4
4,732,598 - Pf6N2E2_4053 0.34 -0.7
4,732,598 - Pf6N2E2_4053 0.34 +0.7
4,732,598 - Pf6N2E2_4053 0.34 +0.4
4,732,639 + Pf6N2E2_4053 0.38 +0.1
4,732,663 + Pf6N2E2_4053 0.41 +0.1
4,732,664 - Pf6N2E2_4053 0.41 +0.1
4,732,664 - Pf6N2E2_4053 0.41 +0.4
4,733,057 - Pf6N2E2_4053 0.80 +1.1
4,733,057 - Pf6N2E2_4053 0.80 -0.3
4,733,129 + Pf6N2E2_4053 0.87 +0.5
4,733,129 + Pf6N2E2_4053 0.87 -0.5
4,733,130 - Pf6N2E2_4053 0.87 +0.4
4,733,132 - Pf6N2E2_4053 0.88 -2.4
4,733,137 + Pf6N2E2_4053 0.88 -0.2
4,733,137 + Pf6N2E2_4053 0.88 +0.5
4,733,138 - Pf6N2E2_4053 0.88 -1.6
4,733,314 + +0.7
4,733,315 - +0.3
4,733,315 - -1.9
4,733,342 + -2.0
4,733,342 + -0.8
4,733,342 + +0.0
4,733,342 + +0.1
4,733,342 + +0.1
4,733,342 + +0.9
4,733,342 + +0.1
4,733,342 + +0.1
4,733,342 + -1.6
4,733,343 - -0.5
4,733,343 - -1.0
4,733,343 - +0.2
4,733,344 + +0.8
4,733,358 + +0.5
4,733,358 + +0.2
4,733,358 + -0.2
4,733,358 + +0.0
4,733,358 + +0.5
4,733,359 - -1.6
4,733,359 - +1.1
4,733,424 + -0.7
4,733,424 + +1.1
4,733,445 + +1.1
4,733,446 - -0.7
4,733,501 - +2.1
4,733,501 - +0.3
4,733,594 + Pf6N2E2_4054 0.23 -1.5
4,733,595 - Pf6N2E2_4054 0.23 -3.0
4,733,964 - -1.9
4,733,984 - -0.5
4,734,012 + -1.1
4,734,012 + +1.3
4,734,012 + +1.1
4,734,013 - -1.4
4,734,013 - -0.5
4,734,013 - +0.5
4,734,191 - Pf6N2E2_4055 0.49 -0.3
4,734,191 - Pf6N2E2_4055 0.49 +1.1
4,734,195 + Pf6N2E2_4055 0.50 +0.3
4,734,195 + Pf6N2E2_4055 0.50 -0.2
4,734,195 + Pf6N2E2_4055 0.50 +0.5
4,734,195 + Pf6N2E2_4055 0.50 +1.3
4,734,196 - Pf6N2E2_4055 0.51 -0.3
4,734,203 + Pf6N2E2_4055 0.54 -0.8
4,734,203 + Pf6N2E2_4055 0.54 -0.9
4,734,204 - Pf6N2E2_4055 0.54 -0.5
4,734,204 - Pf6N2E2_4055 0.54 +2.1
4,734,204 - Pf6N2E2_4055 0.54 +0.6
4,734,204 - Pf6N2E2_4055 0.54 +0.2
4,734,290 + +0.4
4,734,290 + -1.2
4,734,290 + -0.5
4,734,290 + -0.5
4,734,291 - +1.7
4,734,291 - +1.1
4,734,291 - +0.5
4,734,308 + +0.5
4,734,372 + Pf6N2E2_4056 0.13 -0.5
4,734,372 + Pf6N2E2_4056 0.13 -1.3
4,734,372 + Pf6N2E2_4056 0.13 -1.1
4,734,372 + Pf6N2E2_4056 0.13 -0.6
4,734,373 - Pf6N2E2_4056 0.13 +0.0
4,734,447 + Pf6N2E2_4056 0.31 -1.4
4,734,462 + Pf6N2E2_4056 0.34 -0.4
4,734,462 + Pf6N2E2_4056 0.34 -0.9
4,734,462 + Pf6N2E2_4056 0.34 -0.6
4,734,462 + Pf6N2E2_4056 0.34 -0.5
4,734,462 + Pf6N2E2_4056 0.34 -1.0
4,734,462 + Pf6N2E2_4056 0.34 -0.9
4,734,463 - Pf6N2E2_4056 0.34 +0.5
4,734,463 - Pf6N2E2_4056 0.34 +0.4
4,734,463 - Pf6N2E2_4056 0.34 -1.1
4,734,463 - Pf6N2E2_4056 0.34 +0.5
4,734,463 - Pf6N2E2_4056 0.34 +2.1
4,734,463 - Pf6N2E2_4056 0.34 -1.6
4,734,463 - Pf6N2E2_4056 0.34 -0.5
4,734,463 - Pf6N2E2_4056 0.34 +0.6
4,734,463 - Pf6N2E2_4056 0.34 +0.4
4,734,512 - Pf6N2E2_4056 0.46 -0.2
4,734,722 + -0.6
4,734,734 + -0.5
4,734,734 + +1.1
4,734,734 + +0.0
4,734,809 - +0.1
4,734,840 + Pf6N2E2_4057 0.14 +0.1

Or see this region's nucleotide sequence