Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1694
Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Sucrose 5 mM |
---|---|---|---|---|---|
remove | |||||
2,001,512 | + | +0.0 | |||
2,001,603 | + | -1.0 | |||
2,001,924 | - | Pf6N2E2_1692 | 0.54 | -0.8 | |
2,001,924 | - | Pf6N2E2_1692 | 0.54 | +1.1 | |
2,001,924 | - | Pf6N2E2_1692 | 0.54 | +0.0 | |
2,001,925 | + | Pf6N2E2_1692 | 0.54 | +2.0 | |
2,001,926 | - | Pf6N2E2_1692 | 0.54 | +1.0 | |
2,002,084 | + | Pf6N2E2_1692 | 0.79 | +0.7 | |
2,002,085 | - | Pf6N2E2_1692 | 0.79 | +1.0 | |
2,002,460 | + | -0.1 | |||
2,002,460 | + | +0.1 | |||
2,002,460 | + | -0.4 | |||
2,002,461 | - | +1.2 | |||
2,002,461 | - | +1.0 | |||
2,002,490 | + | +1.0 | |||
2,002,490 | + | +1.0 | |||
2,002,490 | + | +1.0 | |||
2,002,491 | - | +0.4 | |||
2,002,491 | - | -1.3 | |||
2,002,491 | - | -0.6 | |||
2,002,491 | - | -1.3 | |||
2,002,491 | - | +0.7 | |||
2,002,756 | - | Pf6N2E2_1694 | 0.46 | +0.0 | |
2,003,687 | - | Pf6N2E2_1695 | 0.48 | +1.0 | |
2,003,687 | - | Pf6N2E2_1695 | 0.48 | +0.0 | |
2,003,740 | - | Pf6N2E2_1695 | 0.52 | +0.0 | |
2,003,755 | - | Pf6N2E2_1695 | 0.54 | -1.0 | |
2,003,876 | + | Pf6N2E2_1695 | 0.64 | -1.0 | |
2,003,939 | + | Pf6N2E2_1695 | 0.69 | -0.4 | |
2,003,939 | + | Pf6N2E2_1695 | 0.69 | -1.8 | |
2,003,940 | - | Pf6N2E2_1695 | 0.69 | -2.0 | |
2,003,940 | - | Pf6N2E2_1695 | 0.69 | +0.0 | |
2,003,940 | - | Pf6N2E2_1695 | 0.69 | -0.0 |
Or see this region's nucleotide sequence