Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1646 and Pf6N2E2_1647 are separated by 21 nucleotides Pf6N2E2_1647 and Pf6N2E2_1648 overlap by 4 nucleotides Pf6N2E2_1648 and Pf6N2E2_1649 are separated by 31 nucleotides
Pf6N2E2_1646 - Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE, at 1,951,481 to 1,952,833
_1646
Pf6N2E2_1647 - Maltose/maltodextrin ABC transporter, permease protein MalF, at 1,952,855 to 1,953,820
_1647
Pf6N2E2_1648 - Maltose/maltodextrin ABC transporter, permease protein MalG, at 1,953,817 to 1,954,659
_1648
Pf6N2E2_1649 - Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19), at 1,954,691 to 1,955,845
_1649
Position (kb) 1952
1953
1954 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1951.904 kb on + strand, within Pf6N2E2_1646 at 1951.905 kb on - strand, within Pf6N2E2_1646 at 1951.985 kb on + strand, within Pf6N2E2_1646 at 1952.012 kb on + strand, within Pf6N2E2_1646 at 1952.111 kb on + strand, within Pf6N2E2_1646 at 1952.111 kb on + strand, within Pf6N2E2_1646 at 1952.111 kb on + strand, within Pf6N2E2_1646 at 1952.112 kb on - strand, within Pf6N2E2_1646 at 1952.115 kb on + strand, within Pf6N2E2_1646 at 1952.115 kb on + strand, within Pf6N2E2_1646 at 1952.115 kb on + strand, within Pf6N2E2_1646 at 1952.116 kb on - strand, within Pf6N2E2_1646 at 1952.116 kb on - strand, within Pf6N2E2_1646 at 1952.132 kb on + strand, within Pf6N2E2_1646 at 1952.298 kb on - strand, within Pf6N2E2_1646 at 1952.363 kb on + strand, within Pf6N2E2_1646 at 1952.363 kb on + strand, within Pf6N2E2_1646 at 1952.364 kb on - strand, within Pf6N2E2_1646 at 1952.534 kb on + strand, within Pf6N2E2_1646 at 1952.535 kb on - strand, within Pf6N2E2_1646 at 1952.582 kb on + strand, within Pf6N2E2_1646 at 1952.582 kb on + strand, within Pf6N2E2_1646 at 1952.583 kb on - strand, within Pf6N2E2_1646 at 1952.583 kb on - strand, within Pf6N2E2_1646 at 1952.583 kb on - strand, within Pf6N2E2_1646 at 1952.642 kb on + strand, within Pf6N2E2_1646 at 1952.832 kb on - strand at 1952.869 kb on + strand at 1952.919 kb on + strand at 1952.970 kb on + strand, within Pf6N2E2_1647 at 1952.971 kb on - strand, within Pf6N2E2_1647 at 1953.080 kb on + strand, within Pf6N2E2_1647 at 1953.081 kb on - strand, within Pf6N2E2_1647 at 1953.081 kb on - strand, within Pf6N2E2_1647 at 1953.503 kb on + strand, within Pf6N2E2_1647 at 1953.638 kb on + strand, within Pf6N2E2_1647 at 1953.638 kb on + strand, within Pf6N2E2_1647 at 1953.638 kb on + strand, within Pf6N2E2_1647 at 1953.683 kb on + strand, within Pf6N2E2_1647 at 1953.684 kb on - strand, within Pf6N2E2_1647 at 1953.780 kb on - strand at 1953.889 kb on + strand at 1953.907 kb on + strand, within Pf6N2E2_1648 at 1953.908 kb on - strand, within Pf6N2E2_1648 at 1953.910 kb on + strand, within Pf6N2E2_1648 at 1953.910 kb on + strand, within Pf6N2E2_1648 at 1953.961 kb on + strand, within Pf6N2E2_1648 at 1953.991 kb on + strand, within Pf6N2E2_1648 at 1954.099 kb on + strand, within Pf6N2E2_1648 at 1954.225 kb on + strand, within Pf6N2E2_1648 at 1954.649 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 1,951,904 + Pf6N2E2_1646 0.31 -0.6 1,951,905 - Pf6N2E2_1646 0.31 -0.6 1,951,985 + Pf6N2E2_1646 0.37 +1.0 1,952,012 + Pf6N2E2_1646 0.39 -0.0 1,952,111 + Pf6N2E2_1646 0.47 -0.0 1,952,111 + Pf6N2E2_1646 0.47 -2.0 1,952,111 + Pf6N2E2_1646 0.47 -0.6 1,952,112 - Pf6N2E2_1646 0.47 +1.0 1,952,115 + Pf6N2E2_1646 0.47 -2.3 1,952,115 + Pf6N2E2_1646 0.47 -1.8 1,952,115 + Pf6N2E2_1646 0.47 +1.0 1,952,116 - Pf6N2E2_1646 0.47 -2.9 1,952,116 - Pf6N2E2_1646 0.47 +1.0 1,952,132 + Pf6N2E2_1646 0.48 -3.0 1,952,298 - Pf6N2E2_1646 0.60 -1.8 1,952,363 + Pf6N2E2_1646 0.65 -2.7 1,952,363 + Pf6N2E2_1646 0.65 -3.2 1,952,364 - Pf6N2E2_1646 0.65 -0.0 1,952,534 + Pf6N2E2_1646 0.78 -0.0 1,952,535 - Pf6N2E2_1646 0.78 -3.0 1,952,582 + Pf6N2E2_1646 0.81 -0.6 1,952,582 + Pf6N2E2_1646 0.81 -1.3 1,952,583 - Pf6N2E2_1646 0.81 -1.0 1,952,583 - Pf6N2E2_1646 0.81 -0.0 1,952,583 - Pf6N2E2_1646 0.81 -3.7 1,952,642 + Pf6N2E2_1646 0.86 +1.0 1,952,832 - -1.8 1,952,869 + -0.0 1,952,919 + -1.6 1,952,970 + Pf6N2E2_1647 0.12 -1.0 1,952,971 - Pf6N2E2_1647 0.12 -1.6 1,953,080 + Pf6N2E2_1647 0.23 -3.9 1,953,081 - Pf6N2E2_1647 0.23 -0.8 1,953,081 - Pf6N2E2_1647 0.23 -1.3 1,953,503 + Pf6N2E2_1647 0.67 -1.3 1,953,638 + Pf6N2E2_1647 0.81 -1.8 1,953,638 + Pf6N2E2_1647 0.81 -0.0 1,953,638 + Pf6N2E2_1647 0.81 -2.3 1,953,683 + Pf6N2E2_1647 0.86 -3.3 1,953,684 - Pf6N2E2_1647 0.86 -2.3 1,953,780 - -2.3 1,953,889 + -2.6 1,953,907 + Pf6N2E2_1648 0.11 -0.4 1,953,908 - Pf6N2E2_1648 0.11 -0.6 1,953,910 + Pf6N2E2_1648 0.11 -1.0 1,953,910 + Pf6N2E2_1648 0.11 -3.0 1,953,961 + Pf6N2E2_1648 0.17 -3.5 1,953,991 + Pf6N2E2_1648 0.21 -1.9 1,954,099 + Pf6N2E2_1648 0.33 -0.6 1,954,225 + Pf6N2E2_1648 0.48 -3.5 1,954,649 + -1.0
Or see this region's nucleotide sequence