Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1646

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1645 and Pf6N2E2_1646 are separated by 92 nucleotidesPf6N2E2_1646 and Pf6N2E2_1647 are separated by 21 nucleotidesPf6N2E2_1647 and Pf6N2E2_1648 overlap by 4 nucleotides Pf6N2E2_1645 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 1,949,832 to 1,951,388 _1645 Pf6N2E2_1646 - Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE, at 1,951,481 to 1,952,833 _1646 Pf6N2E2_1647 - Maltose/maltodextrin ABC transporter, permease protein MalF, at 1,952,855 to 1,953,820 _1647 Pf6N2E2_1648 - Maltose/maltodextrin ABC transporter, permease protein MalG, at 1,953,817 to 1,954,659 _1648 Position (kb) 1951 1952 1953Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1950.545 kb on - strand, within Pf6N2E2_1645at 1950.639 kb on + strand, within Pf6N2E2_1645at 1950.639 kb on + strand, within Pf6N2E2_1645at 1950.639 kb on + strand, within Pf6N2E2_1645at 1950.639 kb on + strand, within Pf6N2E2_1645at 1950.640 kb on - strand, within Pf6N2E2_1645at 1950.640 kb on - strand, within Pf6N2E2_1645at 1950.641 kb on + strand, within Pf6N2E2_1645at 1950.646 kb on + strand, within Pf6N2E2_1645at 1950.647 kb on - strand, within Pf6N2E2_1645at 1950.647 kb on - strand, within Pf6N2E2_1645at 1950.673 kb on + strand, within Pf6N2E2_1645at 1950.674 kb on - strand, within Pf6N2E2_1645at 1950.674 kb on - strand, within Pf6N2E2_1645at 1950.674 kb on - strand, within Pf6N2E2_1645at 1950.674 kb on - strand, within Pf6N2E2_1645at 1950.674 kb on - strand, within Pf6N2E2_1645at 1950.674 kb on - strand, within Pf6N2E2_1645at 1950.677 kb on + strand, within Pf6N2E2_1645at 1950.677 kb on + strand, within Pf6N2E2_1645at 1950.677 kb on + strand, within Pf6N2E2_1645at 1950.677 kb on + strand, within Pf6N2E2_1645at 1950.678 kb on - strand, within Pf6N2E2_1645at 1950.907 kb on + strand, within Pf6N2E2_1645at 1950.908 kb on - strand, within Pf6N2E2_1645at 1950.937 kb on + strand, within Pf6N2E2_1645at 1950.937 kb on + strand, within Pf6N2E2_1645at 1950.937 kb on + strand, within Pf6N2E2_1645at 1950.938 kb on - strand, within Pf6N2E2_1645at 1950.938 kb on - strand, within Pf6N2E2_1645at 1951.082 kb on + strand, within Pf6N2E2_1645at 1951.496 kb on + strandat 1951.904 kb on + strand, within Pf6N2E2_1646at 1951.905 kb on - strand, within Pf6N2E2_1646at 1951.985 kb on + strand, within Pf6N2E2_1646at 1952.012 kb on + strand, within Pf6N2E2_1646at 1952.111 kb on + strand, within Pf6N2E2_1646at 1952.111 kb on + strand, within Pf6N2E2_1646at 1952.111 kb on + strand, within Pf6N2E2_1646at 1952.112 kb on - strand, within Pf6N2E2_1646at 1952.115 kb on + strand, within Pf6N2E2_1646at 1952.115 kb on + strand, within Pf6N2E2_1646at 1952.115 kb on + strand, within Pf6N2E2_1646at 1952.116 kb on - strand, within Pf6N2E2_1646at 1952.116 kb on - strand, within Pf6N2E2_1646at 1952.132 kb on + strand, within Pf6N2E2_1646at 1952.298 kb on - strand, within Pf6N2E2_1646at 1952.363 kb on + strand, within Pf6N2E2_1646at 1952.363 kb on + strand, within Pf6N2E2_1646at 1952.364 kb on - strand, within Pf6N2E2_1646at 1952.534 kb on + strand, within Pf6N2E2_1646at 1952.535 kb on - strand, within Pf6N2E2_1646at 1952.582 kb on + strand, within Pf6N2E2_1646at 1952.582 kb on + strand, within Pf6N2E2_1646at 1952.583 kb on - strand, within Pf6N2E2_1646at 1952.583 kb on - strand, within Pf6N2E2_1646at 1952.583 kb on - strand, within Pf6N2E2_1646at 1952.642 kb on + strand, within Pf6N2E2_1646at 1952.832 kb on - strandat 1952.869 kb on + strandat 1952.919 kb on + strandat 1952.970 kb on + strand, within Pf6N2E2_1647at 1952.971 kb on - strand, within Pf6N2E2_1647at 1953.080 kb on + strand, within Pf6N2E2_1647at 1953.081 kb on - strand, within Pf6N2E2_1647at 1953.081 kb on - strand, within Pf6N2E2_1647at 1953.503 kb on + strand, within Pf6N2E2_1647at 1953.638 kb on + strand, within Pf6N2E2_1647at 1953.638 kb on + strand, within Pf6N2E2_1647at 1953.638 kb on + strand, within Pf6N2E2_1647at 1953.683 kb on + strand, within Pf6N2E2_1647at 1953.684 kb on - strand, within Pf6N2E2_1647at 1953.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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1,950,545 - Pf6N2E2_1645 0.46 -4.1
1,950,639 + Pf6N2E2_1645 0.52 -1.0
1,950,639 + Pf6N2E2_1645 0.52 +1.0
1,950,639 + Pf6N2E2_1645 0.52 -0.0
1,950,639 + Pf6N2E2_1645 0.52 -1.0
1,950,640 - Pf6N2E2_1645 0.52 -2.6
1,950,640 - Pf6N2E2_1645 0.52 -0.6
1,950,641 + Pf6N2E2_1645 0.52 -1.8
1,950,646 + Pf6N2E2_1645 0.52 -0.6
1,950,647 - Pf6N2E2_1645 0.52 -0.6
1,950,647 - Pf6N2E2_1645 0.52 -3.2
1,950,673 + Pf6N2E2_1645 0.54 -0.6
1,950,674 - Pf6N2E2_1645 0.54 +1.0
1,950,674 - Pf6N2E2_1645 0.54 -0.6
1,950,674 - Pf6N2E2_1645 0.54 -0.0
1,950,674 - Pf6N2E2_1645 0.54 -1.0
1,950,674 - Pf6N2E2_1645 0.54 -1.8
1,950,674 - Pf6N2E2_1645 0.54 -2.2
1,950,677 + Pf6N2E2_1645 0.54 -1.7
1,950,677 + Pf6N2E2_1645 0.54 -1.3
1,950,677 + Pf6N2E2_1645 0.54 -2.2
1,950,677 + Pf6N2E2_1645 0.54 -0.6
1,950,678 - Pf6N2E2_1645 0.54 -1.8
1,950,907 + Pf6N2E2_1645 0.69 -1.4
1,950,908 - Pf6N2E2_1645 0.69 +1.0
1,950,937 + Pf6N2E2_1645 0.71 -0.0
1,950,937 + Pf6N2E2_1645 0.71 -2.3
1,950,937 + Pf6N2E2_1645 0.71 +1.0
1,950,938 - Pf6N2E2_1645 0.71 +1.0
1,950,938 - Pf6N2E2_1645 0.71 -1.9
1,951,082 + Pf6N2E2_1645 0.80 -0.0
1,951,496 + -2.9
1,951,904 + Pf6N2E2_1646 0.31 -0.6
1,951,905 - Pf6N2E2_1646 0.31 -0.6
1,951,985 + Pf6N2E2_1646 0.37 +1.0
1,952,012 + Pf6N2E2_1646 0.39 -0.0
1,952,111 + Pf6N2E2_1646 0.47 -0.0
1,952,111 + Pf6N2E2_1646 0.47 -2.0
1,952,111 + Pf6N2E2_1646 0.47 -0.6
1,952,112 - Pf6N2E2_1646 0.47 +1.0
1,952,115 + Pf6N2E2_1646 0.47 -2.3
1,952,115 + Pf6N2E2_1646 0.47 -1.8
1,952,115 + Pf6N2E2_1646 0.47 +1.0
1,952,116 - Pf6N2E2_1646 0.47 -2.9
1,952,116 - Pf6N2E2_1646 0.47 +1.0
1,952,132 + Pf6N2E2_1646 0.48 -3.0
1,952,298 - Pf6N2E2_1646 0.60 -1.8
1,952,363 + Pf6N2E2_1646 0.65 -2.7
1,952,363 + Pf6N2E2_1646 0.65 -3.2
1,952,364 - Pf6N2E2_1646 0.65 -0.0
1,952,534 + Pf6N2E2_1646 0.78 -0.0
1,952,535 - Pf6N2E2_1646 0.78 -3.0
1,952,582 + Pf6N2E2_1646 0.81 -0.6
1,952,582 + Pf6N2E2_1646 0.81 -1.3
1,952,583 - Pf6N2E2_1646 0.81 -1.0
1,952,583 - Pf6N2E2_1646 0.81 -0.0
1,952,583 - Pf6N2E2_1646 0.81 -3.7
1,952,642 + Pf6N2E2_1646 0.86 +1.0
1,952,832 - -1.8
1,952,869 + -0.0
1,952,919 + -1.6
1,952,970 + Pf6N2E2_1647 0.12 -1.0
1,952,971 - Pf6N2E2_1647 0.12 -1.6
1,953,080 + Pf6N2E2_1647 0.23 -3.9
1,953,081 - Pf6N2E2_1647 0.23 -0.8
1,953,081 - Pf6N2E2_1647 0.23 -1.3
1,953,503 + Pf6N2E2_1647 0.67 -1.3
1,953,638 + Pf6N2E2_1647 0.81 -1.8
1,953,638 + Pf6N2E2_1647 0.81 -0.0
1,953,638 + Pf6N2E2_1647 0.81 -2.3
1,953,683 + Pf6N2E2_1647 0.86 -3.3
1,953,684 - Pf6N2E2_1647 0.86 -2.3
1,953,780 - -2.3

Or see this region's nucleotide sequence