Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1335

Experiment: Carbon source Sucrose 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1334 and Pf6N2E2_1335 are separated by 396 nucleotidesPf6N2E2_1335 and Pf6N2E2_1336 are separated by 143 nucleotides Pf6N2E2_1334 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 1,569,860 to 1,570,867 _1334 Pf6N2E2_1335 - Phospholipid-binding protein, at 1,571,264 to 1,571,803 _1335 Pf6N2E2_1336 - AraC family transcription regulator, at 1,571,947 to 1,572,627 _1336 Position (kb) 1571 1572Strain fitness (log2 ratio) -2 -1 0 1at 1570.509 kb on + strand, within Pf6N2E2_1334at 1570.950 kb on - strandat 1570.967 kb on + strandat 1570.967 kb on + strandat 1571.224 kb on + strandat 1571.224 kb on + strandat 1571.225 kb on - strandat 1571.243 kb on + strandat 1571.350 kb on + strand, within Pf6N2E2_1335at 1571.480 kb on + strand, within Pf6N2E2_1335at 1571.480 kb on + strand, within Pf6N2E2_1335at 1571.545 kb on + strand, within Pf6N2E2_1335at 1571.595 kb on + strand, within Pf6N2E2_1335at 1571.744 kb on + strand, within Pf6N2E2_1335at 1571.828 kb on + strandat 1571.829 kb on - strandat 1571.865 kb on - strandat 1571.865 kb on - strandat 1572.053 kb on - strand, within Pf6N2E2_1336at 1572.111 kb on + strand, within Pf6N2E2_1336at 1572.112 kb on - strand, within Pf6N2E2_1336at 1572.237 kb on - strand, within Pf6N2E2_1336at 1572.400 kb on - strand, within Pf6N2E2_1336at 1572.658 kb on + strandat 1572.658 kb on + strandat 1572.658 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
remove
1,570,509 + Pf6N2E2_1334 0.64 -1.2
1,570,950 - +0.8
1,570,967 + -0.2
1,570,967 + +0.3
1,571,224 + -0.2
1,571,224 + -1.2
1,571,225 - -0.5
1,571,243 + +0.8
1,571,350 + Pf6N2E2_1335 0.16 -0.8
1,571,480 + Pf6N2E2_1335 0.40 +1.4
1,571,480 + Pf6N2E2_1335 0.40 -0.8
1,571,545 + Pf6N2E2_1335 0.52 -1.5
1,571,595 + Pf6N2E2_1335 0.61 +0.8
1,571,744 + Pf6N2E2_1335 0.89 -1.2
1,571,828 + -0.2
1,571,829 - +0.6
1,571,865 - +0.8
1,571,865 - -0.8
1,572,053 - Pf6N2E2_1336 0.16 -2.2
1,572,111 + Pf6N2E2_1336 0.24 -0.3
1,572,112 - Pf6N2E2_1336 0.24 -1.2
1,572,237 - Pf6N2E2_1336 0.43 +0.6
1,572,400 - Pf6N2E2_1336 0.67 +0.8
1,572,658 + -0.0
1,572,658 + +0.8
1,572,658 + +0.1

Or see this region's nucleotide sequence