Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1257

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1256 and Pf6N2E2_1257 are separated by 136 nucleotidesPf6N2E2_1257 and Pf6N2E2_1258 are separated by 142 nucleotidesPf6N2E2_1258 and Pf6N2E2_1259 are separated by 118 nucleotides Pf6N2E2_1256 - Transcriptional regulator, LysR family, at 1,471,485 to 1,472,387 _1256 Pf6N2E2_1257 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 1,472,524 to 1,473,399 _1257 Pf6N2E2_1258 - FIG00960119: hypothetical protein, at 1,473,542 to 1,473,751 _1258 Pf6N2E2_1259 - Isochorismatase (EC 3.3.2.1), at 1,473,870 to 1,474,685 _1259 Position (kb) 1472 1473 1474Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1471.524 kb on - strandat 1471.575 kb on + strandat 1471.575 kb on + strandat 1471.576 kb on - strand, within Pf6N2E2_1256at 1471.576 kb on - strand, within Pf6N2E2_1256at 1471.576 kb on - strand, within Pf6N2E2_1256at 1471.576 kb on - strand, within Pf6N2E2_1256at 1471.610 kb on + strand, within Pf6N2E2_1256at 1471.660 kb on - strand, within Pf6N2E2_1256at 1471.767 kb on - strand, within Pf6N2E2_1256at 1471.767 kb on - strand, within Pf6N2E2_1256at 1471.781 kb on - strand, within Pf6N2E2_1256at 1471.867 kb on + strand, within Pf6N2E2_1256at 1471.868 kb on - strand, within Pf6N2E2_1256at 1471.884 kb on + strand, within Pf6N2E2_1256at 1471.884 kb on + strand, within Pf6N2E2_1256at 1471.885 kb on - strandat 1471.885 kb on - strand, within Pf6N2E2_1256at 1471.914 kb on + strand, within Pf6N2E2_1256at 1472.352 kb on + strandat 1472.480 kb on + strandat 1472.481 kb on - strandat 1472.481 kb on - strandat 1472.481 kb on - strandat 1472.523 kb on + strandat 1472.523 kb on + strandat 1472.630 kb on + strand, within Pf6N2E2_1257at 1472.630 kb on + strand, within Pf6N2E2_1257at 1472.631 kb on - strand, within Pf6N2E2_1257at 1472.870 kb on + strand, within Pf6N2E2_1257at 1472.871 kb on - strand, within Pf6N2E2_1257at 1472.871 kb on - strand, within Pf6N2E2_1257at 1472.871 kb on - strand, within Pf6N2E2_1257at 1472.880 kb on + strand, within Pf6N2E2_1257at 1472.880 kb on + strand, within Pf6N2E2_1257at 1472.880 kb on + strand, within Pf6N2E2_1257at 1472.880 kb on + strand, within Pf6N2E2_1257at 1472.881 kb on - strand, within Pf6N2E2_1257at 1472.881 kb on - strand, within Pf6N2E2_1257at 1472.881 kb on - strand, within Pf6N2E2_1257at 1472.881 kb on - strand, within Pf6N2E2_1257at 1472.959 kb on + strand, within Pf6N2E2_1257at 1472.959 kb on + strand, within Pf6N2E2_1257at 1472.959 kb on + strand, within Pf6N2E2_1257at 1472.959 kb on + strand, within Pf6N2E2_1257at 1472.960 kb on - strand, within Pf6N2E2_1257at 1472.960 kb on - strand, within Pf6N2E2_1257at 1472.960 kb on - strand, within Pf6N2E2_1257at 1472.960 kb on - strand, within Pf6N2E2_1257at 1473.107 kb on + strand, within Pf6N2E2_1257at 1473.107 kb on + strand, within Pf6N2E2_1257at 1473.107 kb on + strand, within Pf6N2E2_1257at 1473.108 kb on - strand, within Pf6N2E2_1257at 1473.108 kb on - strand, within Pf6N2E2_1257at 1473.135 kb on + strand, within Pf6N2E2_1257at 1473.200 kb on + strand, within Pf6N2E2_1257at 1473.200 kb on + strand, within Pf6N2E2_1257at 1473.200 kb on + strand, within Pf6N2E2_1257at 1473.201 kb on - strand, within Pf6N2E2_1257at 1473.250 kb on + strand, within Pf6N2E2_1257at 1473.250 kb on + strand, within Pf6N2E2_1257at 1473.313 kb on + strandat 1473.313 kb on + strandat 1473.313 kb on + strandat 1473.314 kb on - strandat 1473.314 kb on - strandat 1473.314 kb on - strandat 1473.314 kb on - strandat 1473.393 kb on + strandat 1473.393 kb on + strandat 1473.397 kb on + strandat 1473.397 kb on + strandat 1473.438 kb on + strandat 1473.439 kb on - strandat 1473.484 kb on + strandat 1473.508 kb on + strandat 1473.508 kb on + strandat 1473.509 kb on - strandat 1473.509 kb on - strandat 1473.509 kb on - strandat 1473.526 kb on + strandat 1473.526 kb on + strandat 1473.526 kb on + strandat 1473.526 kb on + strandat 1473.526 kb on + strandat 1473.526 kb on + strandat 1473.526 kb on + strandat 1473.527 kb on - strandat 1473.564 kb on + strand, within Pf6N2E2_1258at 1473.564 kb on + strand, within Pf6N2E2_1258at 1473.570 kb on + strand, within Pf6N2E2_1258at 1473.608 kb on - strand, within Pf6N2E2_1258at 1473.608 kb on - strand, within Pf6N2E2_1258at 1473.608 kb on - strand, within Pf6N2E2_1258at 1473.608 kb on - strand, within Pf6N2E2_1258at 1473.745 kb on + strandat 1473.745 kb on + strandat 1473.746 kb on - strandat 1473.746 kb on - strandat 1473.746 kb on - strandat 1473.746 kb on - strandat 1473.750 kb on - strandat 1473.800 kb on + strandat 1473.800 kb on + strandat 1473.800 kb on + strandat 1473.800 kb on + strandat 1473.800 kb on + strandat 1473.801 kb on - strandat 1473.801 kb on - strandat 1473.801 kb on - strandat 1473.801 kb on - strandat 1473.801 kb on - strandat 1473.801 kb on - strandat 1473.801 kb on - strandat 1473.801 kb on - strandat 1473.839 kb on - strandat 1473.883 kb on + strandat 1473.883 kb on + strandat 1473.893 kb on - strandat 1473.993 kb on + strand, within Pf6N2E2_1259at 1473.993 kb on + strand, within Pf6N2E2_1259at 1473.994 kb on - strand, within Pf6N2E2_1259at 1474.219 kb on - strand, within Pf6N2E2_1259at 1474.219 kb on - strand, within Pf6N2E2_1259at 1474.221 kb on + strand, within Pf6N2E2_1259at 1474.222 kb on - strand, within Pf6N2E2_1259at 1474.365 kb on + strand, within Pf6N2E2_1259at 1474.365 kb on + strand, within Pf6N2E2_1259at 1474.366 kb on - strand, within Pf6N2E2_1259at 1474.366 kb on - strand, within Pf6N2E2_1259

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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1,471,524 - +2.9
1,471,575 + +1.7
1,471,575 + +1.9
1,471,576 - Pf6N2E2_1256 0.10 +0.9
1,471,576 - Pf6N2E2_1256 0.10 +0.9
1,471,576 - Pf6N2E2_1256 0.10 -0.9
1,471,576 - Pf6N2E2_1256 0.10 +0.1
1,471,610 + Pf6N2E2_1256 0.14 -1.1
1,471,660 - Pf6N2E2_1256 0.19 -1.5
1,471,767 - Pf6N2E2_1256 0.31 -0.7
1,471,767 - Pf6N2E2_1256 0.31 +0.4
1,471,781 - Pf6N2E2_1256 0.33 -0.1
1,471,867 + Pf6N2E2_1256 0.42 +0.3
1,471,868 - Pf6N2E2_1256 0.42 +0.3
1,471,884 + Pf6N2E2_1256 0.44 -0.1
1,471,884 + Pf6N2E2_1256 0.44 -1.5
1,471,885 - +0.9
1,471,885 - Pf6N2E2_1256 0.44 -0.0
1,471,914 + Pf6N2E2_1256 0.48 +0.7
1,472,352 + -0.7
1,472,480 + -0.1
1,472,481 - +1.4
1,472,481 - +0.9
1,472,481 - +0.6
1,472,523 + +1.9
1,472,523 + -0.4
1,472,630 + Pf6N2E2_1257 0.12 +0.9
1,472,630 + Pf6N2E2_1257 0.12 -0.5
1,472,631 - Pf6N2E2_1257 0.12 -1.1
1,472,870 + Pf6N2E2_1257 0.39 +0.9
1,472,871 - Pf6N2E2_1257 0.40 +0.9
1,472,871 - Pf6N2E2_1257 0.40 -1.9
1,472,871 - Pf6N2E2_1257 0.40 +0.9
1,472,880 + Pf6N2E2_1257 0.41 -0.1
1,472,880 + Pf6N2E2_1257 0.41 +0.9
1,472,880 + Pf6N2E2_1257 0.41 +0.5
1,472,880 + Pf6N2E2_1257 0.41 -1.9
1,472,881 - Pf6N2E2_1257 0.41 -1.9
1,472,881 - Pf6N2E2_1257 0.41 +0.1
1,472,881 - Pf6N2E2_1257 0.41 +0.2
1,472,881 - Pf6N2E2_1257 0.41 +0.9
1,472,959 + Pf6N2E2_1257 0.50 -0.1
1,472,959 + Pf6N2E2_1257 0.50 +0.9
1,472,959 + Pf6N2E2_1257 0.50 +0.1
1,472,959 + Pf6N2E2_1257 0.50 -1.9
1,472,960 - Pf6N2E2_1257 0.50 -1.1
1,472,960 - Pf6N2E2_1257 0.50 -0.1
1,472,960 - Pf6N2E2_1257 0.50 +2.4
1,472,960 - Pf6N2E2_1257 0.50 -1.9
1,473,107 + Pf6N2E2_1257 0.67 -0.7
1,473,107 + Pf6N2E2_1257 0.67 +0.3
1,473,107 + Pf6N2E2_1257 0.67 +0.9
1,473,108 - Pf6N2E2_1257 0.67 -0.7
1,473,108 - Pf6N2E2_1257 0.67 -0.1
1,473,135 + Pf6N2E2_1257 0.70 -0.7
1,473,200 + Pf6N2E2_1257 0.77 +1.4
1,473,200 + Pf6N2E2_1257 0.77 +0.9
1,473,200 + Pf6N2E2_1257 0.77 -0.1
1,473,201 - Pf6N2E2_1257 0.77 -0.5
1,473,250 + Pf6N2E2_1257 0.83 -0.1
1,473,250 + Pf6N2E2_1257 0.83 -0.1
1,473,313 + +0.6
1,473,313 + -1.5
1,473,313 + -1.5
1,473,314 - +0.9
1,473,314 - +1.9
1,473,314 - -0.7
1,473,314 - +0.9
1,473,393 + +0.9
1,473,393 + -0.5
1,473,397 + -0.3
1,473,397 + -0.8
1,473,438 + +0.3
1,473,439 - +0.9
1,473,484 + +0.9
1,473,508 + -0.2
1,473,508 + +0.3
1,473,509 - +0.9
1,473,509 - +0.9
1,473,509 - +0.9
1,473,526 + -0.1
1,473,526 + +0.5
1,473,526 + -0.1
1,473,526 + -1.2
1,473,526 + -0.1
1,473,526 + -0.9
1,473,526 + -0.1
1,473,527 - -0.7
1,473,564 + Pf6N2E2_1258 0.10 +1.9
1,473,564 + Pf6N2E2_1258 0.10 +0.4
1,473,570 + Pf6N2E2_1258 0.13 +0.2
1,473,608 - Pf6N2E2_1258 0.31 -1.7
1,473,608 - Pf6N2E2_1258 0.31 +0.9
1,473,608 - Pf6N2E2_1258 0.31 +0.9
1,473,608 - Pf6N2E2_1258 0.31 +0.9
1,473,745 + +0.9
1,473,745 + -0.7
1,473,746 - -0.9
1,473,746 - +0.2
1,473,746 - -0.1
1,473,746 - +0.6
1,473,750 - -0.9
1,473,800 + +0.3
1,473,800 + +0.4
1,473,800 + -0.1
1,473,800 + +0.9
1,473,800 + +0.9
1,473,801 - +0.3
1,473,801 - +0.2
1,473,801 - +0.3
1,473,801 - +0.1
1,473,801 - -0.6
1,473,801 - -0.9
1,473,801 - +0.5
1,473,801 - +0.6
1,473,839 - -0.6
1,473,883 + -1.5
1,473,883 + +0.9
1,473,893 - -0.5
1,473,993 + Pf6N2E2_1259 0.15 -0.1
1,473,993 + Pf6N2E2_1259 0.15 -0.1
1,473,994 - Pf6N2E2_1259 0.15 +0.1
1,474,219 - Pf6N2E2_1259 0.43 -0.7
1,474,219 - Pf6N2E2_1259 0.43 -0.5
1,474,221 + Pf6N2E2_1259 0.43 -1.5
1,474,222 - Pf6N2E2_1259 0.43 +0.6
1,474,365 + Pf6N2E2_1259 0.61 +0.3
1,474,365 + Pf6N2E2_1259 0.61 -0.4
1,474,366 - Pf6N2E2_1259 0.61 -0.9
1,474,366 - Pf6N2E2_1259 0.61 +1.0

Or see this region's nucleotide sequence