Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1085

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1082 and Pf6N2E2_1083 are separated by 230 nucleotidesPf6N2E2_1083 and Pf6N2E2_1084 are separated by 150 nucleotidesPf6N2E2_1084 and Pf6N2E2_1085 are separated by 9 nucleotidesPf6N2E2_1085 and Pf6N2E2_1086 are separated by 295 nucleotides Pf6N2E2_1082 - CopG protein, at 1,265,966 to 1,266,412 _1082 Pf6N2E2_1083 - hypothetical protein, at 1,266,643 to 1,266,780 _1083 Pf6N2E2_1084 - hypothetical protein, at 1,266,931 to 1,267,119 _1084 Pf6N2E2_1085 - Fe2+/Zn2+ uptake regulation proteins, at 1,267,129 to 1,267,509 _1085 Pf6N2E2_1086 - Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching, at 1,267,805 to 1,270,153 _1086 Position (kb) 1267 1268Strain fitness (log2 ratio) -2 -1 0 1 2at 1266.495 kb on - strandat 1266.587 kb on - strandat 1266.602 kb on + strandat 1266.602 kb on + strandat 1266.602 kb on + strandat 1266.644 kb on + strandat 1266.760 kb on + strand, within Pf6N2E2_1083at 1266.760 kb on + strand, within Pf6N2E2_1083at 1266.761 kb on - strand, within Pf6N2E2_1083at 1266.780 kb on + strandat 1266.780 kb on + strandat 1266.780 kb on + strandat 1266.780 kb on + strandat 1266.780 kb on + strandat 1266.780 kb on + strandat 1266.781 kb on - strandat 1266.781 kb on - strandat 1266.781 kb on - strandat 1266.781 kb on - strandat 1266.781 kb on - strandat 1266.784 kb on + strandat 1266.784 kb on + strandat 1266.784 kb on + strandat 1266.784 kb on + strandat 1266.784 kb on + strandat 1266.785 kb on - strandat 1266.785 kb on - strandat 1266.785 kb on - strandat 1266.785 kb on - strandat 1266.785 kb on - strandat 1266.785 kb on - strandat 1266.785 kb on - strandat 1266.785 kb on - strandat 1266.785 kb on - strandat 1266.819 kb on + strandat 1266.820 kb on - strandat 1266.835 kb on + strandat 1266.874 kb on - strandat 1266.912 kb on + strandat 1266.913 kb on - strandat 1266.929 kb on + strandat 1267.048 kb on + strand, within Pf6N2E2_1084at 1267.048 kb on + strand, within Pf6N2E2_1084at 1267.435 kb on + strand, within Pf6N2E2_1085at 1267.435 kb on + strand, within Pf6N2E2_1085at 1267.436 kb on - strand, within Pf6N2E2_1085at 1267.560 kb on + strandat 1267.561 kb on - strandat 1267.563 kb on + strandat 1267.564 kb on - strandat 1267.564 kb on - strandat 1267.658 kb on - strandat 1267.994 kb on + strandat 1268.214 kb on - strand, within Pf6N2E2_1086

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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1,266,495 - -0.9
1,266,587 - -0.1
1,266,602 + -0.9
1,266,602 + +0.9
1,266,602 + +0.9
1,266,644 + +0.9
1,266,760 + Pf6N2E2_1083 0.85 +0.5
1,266,760 + Pf6N2E2_1083 0.85 -0.1
1,266,761 - Pf6N2E2_1083 0.86 +0.8
1,266,780 + +0.1
1,266,780 + -1.1
1,266,780 + -0.7
1,266,780 + +0.3
1,266,780 + -0.4
1,266,780 + -0.1
1,266,781 - +0.9
1,266,781 - -1.0
1,266,781 - +0.9
1,266,781 - -0.1
1,266,781 - +0.9
1,266,784 + -0.1
1,266,784 + +0.1
1,266,784 + +0.9
1,266,784 + +0.9
1,266,784 + +0.4
1,266,785 - +0.9
1,266,785 - -1.1
1,266,785 - +0.9
1,266,785 - -0.1
1,266,785 - -0.2
1,266,785 - -0.1
1,266,785 - -1.1
1,266,785 - -1.1
1,266,785 - -0.3
1,266,819 + +0.1
1,266,820 - -0.7
1,266,835 + -0.3
1,266,874 - -2.1
1,266,912 + +0.9
1,266,913 - -0.1
1,266,929 + +1.9
1,267,048 + Pf6N2E2_1084 0.62 +0.2
1,267,048 + Pf6N2E2_1084 0.62 +1.3
1,267,435 + Pf6N2E2_1085 0.80 -1.9
1,267,435 + Pf6N2E2_1085 0.80 -0.7
1,267,436 - Pf6N2E2_1085 0.81 +0.9
1,267,560 + -0.1
1,267,561 - +0.1
1,267,563 + +0.9
1,267,564 - +0.3
1,267,564 - -1.9
1,267,658 - -0.7
1,267,994 + +0.9
1,268,214 - Pf6N2E2_1086 0.17 +0.9

Or see this region's nucleotide sequence