Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1605

Experiment: Carbon source Sucrose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1604 and Pf6N2E2_1605 are separated by 872 nucleotidesPf6N2E2_1605 and Pf6N2E2_1606 are separated by 16 nucleotides Pf6N2E2_1604 - Acetyltransferase, at 1,875,967 to 1,876,467 _1604 Pf6N2E2_1605 - Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-), at 1,877,340 to 1,878,593 _1605 Pf6N2E2_1606 - Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-), at 1,878,610 to 1,879,707 _1606 Position (kb) 1877 1878 1879Strain fitness (log2 ratio) -2 -1 0 1 2at 1876.349 kb on + strand, within Pf6N2E2_1604at 1876.374 kb on + strand, within Pf6N2E2_1604at 1876.500 kb on + strandat 1876.500 kb on + strandat 1876.819 kb on + strandat 1876.819 kb on + strandat 1877.251 kb on - strandat 1877.269 kb on - strandat 1877.269 kb on - strandat 1877.523 kb on - strand, within Pf6N2E2_1605at 1877.524 kb on + strand, within Pf6N2E2_1605at 1877.525 kb on - strand, within Pf6N2E2_1605at 1877.525 kb on - strand, within Pf6N2E2_1605at 1877.581 kb on + strand, within Pf6N2E2_1605at 1877.582 kb on - strand, within Pf6N2E2_1605at 1877.582 kb on - strand, within Pf6N2E2_1605at 1877.791 kb on + strand, within Pf6N2E2_1605at 1877.792 kb on - strand, within Pf6N2E2_1605at 1877.792 kb on - strand, within Pf6N2E2_1605at 1877.792 kb on - strand, within Pf6N2E2_1605at 1877.878 kb on + strand, within Pf6N2E2_1605at 1877.879 kb on - strand, within Pf6N2E2_1605at 1878.196 kb on + strand, within Pf6N2E2_1605at 1878.196 kb on + strand, within Pf6N2E2_1605at 1878.196 kb on + strand, within Pf6N2E2_1605at 1878.201 kb on - strand, within Pf6N2E2_1605at 1878.262 kb on + strand, within Pf6N2E2_1605at 1878.262 kb on + strand, within Pf6N2E2_1605at 1878.262 kb on + strand, within Pf6N2E2_1605at 1878.571 kb on - strandat 1878.630 kb on - strandat 1878.797 kb on + strand, within Pf6N2E2_1606at 1878.845 kb on + strand, within Pf6N2E2_1606at 1878.845 kb on + strand, within Pf6N2E2_1606at 1878.846 kb on - strand, within Pf6N2E2_1606at 1878.956 kb on + strand, within Pf6N2E2_1606at 1878.957 kb on - strand, within Pf6N2E2_1606at 1879.242 kb on + strand, within Pf6N2E2_1606at 1879.242 kb on + strand, within Pf6N2E2_1606at 1879.242 kb on + strand, within Pf6N2E2_1606at 1879.242 kb on + strand, within Pf6N2E2_1606at 1879.243 kb on - strand, within Pf6N2E2_1606at 1879.479 kb on - strand, within Pf6N2E2_1606at 1879.526 kb on + strand, within Pf6N2E2_1606at 1879.556 kb on + strand, within Pf6N2E2_1606at 1879.556 kb on + strand, within Pf6N2E2_1606

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM
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1,876,349 + Pf6N2E2_1604 0.76 -0.3
1,876,374 + Pf6N2E2_1604 0.81 +0.4
1,876,500 + +0.4
1,876,500 + +0.4
1,876,819 + -0.2
1,876,819 + -0.4
1,877,251 - -0.2
1,877,269 - -1.0
1,877,269 - -2.0
1,877,523 - Pf6N2E2_1605 0.15 -0.5
1,877,524 + Pf6N2E2_1605 0.15 +0.9
1,877,525 - Pf6N2E2_1605 0.15 -1.0
1,877,525 - Pf6N2E2_1605 0.15 -1.4
1,877,581 + Pf6N2E2_1605 0.19 +0.9
1,877,582 - Pf6N2E2_1605 0.19 -0.7
1,877,582 - Pf6N2E2_1605 0.19 +0.8
1,877,791 + Pf6N2E2_1605 0.36 -0.8
1,877,792 - Pf6N2E2_1605 0.36 -0.7
1,877,792 - Pf6N2E2_1605 0.36 -0.1
1,877,792 - Pf6N2E2_1605 0.36 -0.1
1,877,878 + Pf6N2E2_1605 0.43 -0.7
1,877,879 - Pf6N2E2_1605 0.43 +1.0
1,878,196 + Pf6N2E2_1605 0.68 -0.7
1,878,196 + Pf6N2E2_1605 0.68 -1.2
1,878,196 + Pf6N2E2_1605 0.68 +0.9
1,878,201 - Pf6N2E2_1605 0.69 -0.1
1,878,262 + Pf6N2E2_1605 0.74 +2.4
1,878,262 + Pf6N2E2_1605 0.74 +0.9
1,878,262 + Pf6N2E2_1605 0.74 -0.7
1,878,571 - +0.9
1,878,630 - +0.9
1,878,797 + Pf6N2E2_1606 0.17 +0.9
1,878,845 + Pf6N2E2_1606 0.21 +0.0
1,878,845 + Pf6N2E2_1606 0.21 -0.2
1,878,846 - Pf6N2E2_1606 0.21 -0.1
1,878,956 + Pf6N2E2_1606 0.32 -0.7
1,878,957 - Pf6N2E2_1606 0.32 +0.9
1,879,242 + Pf6N2E2_1606 0.58 -0.4
1,879,242 + Pf6N2E2_1606 0.58 +0.2
1,879,242 + Pf6N2E2_1606 0.58 -0.5
1,879,242 + Pf6N2E2_1606 0.58 -0.6
1,879,243 - Pf6N2E2_1606 0.58 +0.9
1,879,479 - Pf6N2E2_1606 0.79 -0.4
1,879,526 + Pf6N2E2_1606 0.83 -0.1
1,879,556 + Pf6N2E2_1606 0.86 +0.9
1,879,556 + Pf6N2E2_1606 0.86 -0.7

Or see this region's nucleotide sequence