Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22295 and BWI76_RS22300 are separated by 212 nucleotides BWI76_RS22300 and BWI76_RS22305 overlap by 8 nucleotides BWI76_RS22305 and BWI76_RS22310 overlap by 4 nucleotides
BWI76_RS22295: BWI76_RS22295 - 6-phospho-beta-glucosidase, at 4,648,310 to 4,649,734
_RS22295
BWI76_RS22300: BWI76_RS22300 - hydrogenase 3 maturation endopeptidase HyCI, at 4,649,947 to 4,650,432
_RS22300
BWI76_RS22305: BWI76_RS22305 - formate hydrogenlyase maturation protein HycH, at 4,650,425 to 4,650,835
_RS22305
BWI76_RS22310: BWI76_RS22310 - hydrogenase 3 small subunit, at 4,650,832 to 4,651,599
_RS22310
Position (kb)
4649
4650
4651 Strain fitness (log2 ratio)
-2
-1
0
1 at 4649.018 kb on - strand, within BWI76_RS22295 at 4649.040 kb on - strand, within BWI76_RS22295 at 4649.119 kb on - strand, within BWI76_RS22295 at 4649.173 kb on - strand, within BWI76_RS22295 at 4649.251 kb on - strand, within BWI76_RS22295 at 4649.368 kb on + strand, within BWI76_RS22295 at 4649.552 kb on + strand, within BWI76_RS22295 at 4649.559 kb on - strand, within BWI76_RS22295 at 4649.614 kb on + strand at 4649.774 kb on - strand at 4649.995 kb on + strand at 4650.366 kb on - strand, within BWI76_RS22300 at 4650.494 kb on - strand, within BWI76_RS22305 at 4650.990 kb on + strand, within BWI76_RS22310 at 4651.316 kb on + strand, within BWI76_RS22310 at 4651.334 kb on - strand, within BWI76_RS22310 at 4651.414 kb on - strand, within BWI76_RS22310 at 4651.414 kb on - strand, within BWI76_RS22310
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 4,649,018 - BWI76_RS22295 0.50 -0.4 4,649,040 - BWI76_RS22295 0.51 -0.1 4,649,119 - BWI76_RS22295 0.57 -0.0 4,649,173 - BWI76_RS22295 0.61 +0.5 4,649,251 - BWI76_RS22295 0.66 -0.0 4,649,368 + BWI76_RS22295 0.74 +0.0 4,649,552 + BWI76_RS22295 0.87 +1.3 4,649,559 - BWI76_RS22295 0.88 -1.2 4,649,614 + +0.7 4,649,774 - -0.4 4,649,995 + -1.2 4,650,366 - BWI76_RS22300 0.86 -1.0 4,650,494 - BWI76_RS22305 0.17 +0.7 4,650,990 + BWI76_RS22310 0.21 -0.1 4,651,316 + BWI76_RS22310 0.63 -1.2 4,651,334 - BWI76_RS22310 0.65 +0.0 4,651,414 - BWI76_RS22310 0.76 -1.9 4,651,414 - BWI76_RS22310 0.76 -0.1
Or see this region's nucleotide sequence