Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15090

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS15085 and BWI76_RS15090 overlap by 11 nucleotidesBWI76_RS15090 and BWI76_RS15095 are separated by 18 nucleotidesBWI76_RS15095 and BWI76_RS15100 are separated by 29 nucleotides BWI76_RS15085: BWI76_RS15085 - 3-deoxy-D-arabinose-heptulosonic-7-phosphate synthase, at 3,160,014 to 3,161,183 _RS15085 BWI76_RS15090: BWI76_RS15090 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 3,161,173 to 3,161,958 _RS15090 BWI76_RS15095: BWI76_RS15095 - isochorismatase, at 3,161,977 to 3,162,609 _RS15095 BWI76_RS15100: BWI76_RS15100 - phenazine biosynthesis protein PhzE, at 3,162,639 to 3,164,588 _RS15100 Position (kb) 3161 3162Strain fitness (log2 ratio) -2 -1 0 1at 3160.176 kb on - strand, within BWI76_RS15085at 3160.222 kb on + strand, within BWI76_RS15085at 3160.230 kb on - strand, within BWI76_RS15085at 3160.258 kb on + strand, within BWI76_RS15085at 3160.296 kb on - strandat 3160.358 kb on + strand, within BWI76_RS15085at 3160.373 kb on + strand, within BWI76_RS15085at 3160.386 kb on - strand, within BWI76_RS15085at 3160.387 kb on - strand, within BWI76_RS15085at 3160.391 kb on - strand, within BWI76_RS15085at 3160.463 kb on + strand, within BWI76_RS15085at 3160.477 kb on - strand, within BWI76_RS15085at 3160.552 kb on + strand, within BWI76_RS15085at 3160.677 kb on + strand, within BWI76_RS15085at 3160.722 kb on + strand, within BWI76_RS15085at 3160.785 kb on + strand, within BWI76_RS15085at 3160.850 kb on + strand, within BWI76_RS15085at 3160.889 kb on - strandat 3160.891 kb on - strand, within BWI76_RS15085at 3160.981 kb on + strand, within BWI76_RS15085at 3161.145 kb on - strandat 3161.190 kb on + strandat 3161.200 kb on - strandat 3161.270 kb on - strand, within BWI76_RS15090at 3161.275 kb on + strand, within BWI76_RS15090at 3161.314 kb on - strand, within BWI76_RS15090at 3161.622 kb on + strand, within BWI76_RS15090at 3161.719 kb on - strand, within BWI76_RS15090at 3161.876 kb on + strand, within BWI76_RS15090at 3161.884 kb on - strandat 3161.975 kb on - strandat 3161.991 kb on + strandat 3162.061 kb on - strand, within BWI76_RS15095at 3162.120 kb on - strandat 3162.120 kb on - strand, within BWI76_RS15095at 3162.229 kb on - strand, within BWI76_RS15095at 3162.229 kb on - strand, within BWI76_RS15095at 3162.545 kb on - strand, within BWI76_RS15095at 3162.652 kb on - strandat 3162.720 kb on - strandat 3162.766 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
remove
3,160,176 - BWI76_RS15085 0.14 -0.6
3,160,222 + BWI76_RS15085 0.18 -0.0
3,160,230 - BWI76_RS15085 0.18 -0.3
3,160,258 + BWI76_RS15085 0.21 +0.1
3,160,296 - -0.0
3,160,358 + BWI76_RS15085 0.29 -1.7
3,160,373 + BWI76_RS15085 0.31 -0.1
3,160,386 - BWI76_RS15085 0.32 -0.1
3,160,387 - BWI76_RS15085 0.32 -0.4
3,160,391 - BWI76_RS15085 0.32 -0.4
3,160,463 + BWI76_RS15085 0.38 -2.0
3,160,477 - BWI76_RS15085 0.40 -1.5
3,160,552 + BWI76_RS15085 0.46 -0.5
3,160,677 + BWI76_RS15085 0.57 -0.2
3,160,722 + BWI76_RS15085 0.61 -1.0
3,160,785 + BWI76_RS15085 0.66 -0.7
3,160,850 + BWI76_RS15085 0.71 -0.5
3,160,889 - +1.2
3,160,891 - BWI76_RS15085 0.75 -0.5
3,160,981 + BWI76_RS15085 0.83 -0.4
3,161,145 - -1.7
3,161,190 + +0.4
3,161,200 - +0.3
3,161,270 - BWI76_RS15090 0.12 -1.1
3,161,275 + BWI76_RS15090 0.13 -1.6
3,161,314 - BWI76_RS15090 0.18 -0.4
3,161,622 + BWI76_RS15090 0.57 -0.7
3,161,719 - BWI76_RS15090 0.69 -0.9
3,161,876 + BWI76_RS15090 0.89 -2.1
3,161,884 - -0.5
3,161,975 - -0.7
3,161,991 + -0.2
3,162,061 - BWI76_RS15095 0.13 -0.3
3,162,120 - +0.2
3,162,120 - BWI76_RS15095 0.23 -0.5
3,162,229 - BWI76_RS15095 0.40 +0.9
3,162,229 - BWI76_RS15095 0.40 +0.1
3,162,545 - BWI76_RS15095 0.90 -0.6
3,162,652 - +0.2
3,162,720 - -0.4
3,162,766 + +0.1

Or see this region's nucleotide sequence