Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14150 and BWI76_RS14155 are separated by 3 nucleotides BWI76_RS14155 and BWI76_RS14160 are separated by 11 nucleotides
BWI76_RS14150: BWI76_RS14150 - dihydrolipoyllysine-residue acetyltransferase, at 2,959,986 to 2,961,515
_RS14150
BWI76_RS14155: BWI76_RS14155 - transketolase, at 2,961,519 to 2,962,538
_RS14155
BWI76_RS14160: BWI76_RS14160 - ABC transporter substrate-binding protein, at 2,962,550 to 2,963,512
_RS14160
Position (kb)
2961
2962
2963 Strain fitness (log2 ratio)
-1
0
1 at 2961.052 kb on - strand, within BWI76_RS14150 at 2961.084 kb on + strand, within BWI76_RS14150 at 2961.119 kb on + strand, within BWI76_RS14150 at 2961.200 kb on + strand, within BWI76_RS14150 at 2961.600 kb on - strand at 2961.600 kb on - strand at 2961.602 kb on + strand at 2962.064 kb on + strand, within BWI76_RS14155 at 2962.351 kb on - strand, within BWI76_RS14155 at 2962.356 kb on - strand, within BWI76_RS14155 at 2962.457 kb on - strand at 2962.690 kb on - strand, within BWI76_RS14160 at 2962.964 kb on + strand, within BWI76_RS14160 at 2963.020 kb on - strand, within BWI76_RS14160 at 2963.198 kb on - strand, within BWI76_RS14160 at 2963.241 kb on + strand, within BWI76_RS14160 at 2963.375 kb on + strand, within BWI76_RS14160 at 2963.388 kb on + strand, within BWI76_RS14160 at 2963.481 kb on + strand at 2963.481 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 2,961,052 - BWI76_RS14150 0.70 -0.2 2,961,084 + BWI76_RS14150 0.72 -1.0 2,961,119 + BWI76_RS14150 0.74 -0.7 2,961,200 + BWI76_RS14150 0.79 -1.3 2,961,600 - -0.5 2,961,600 - -0.5 2,961,602 + -0.3 2,962,064 + BWI76_RS14155 0.53 -0.9 2,962,351 - BWI76_RS14155 0.82 -1.0 2,962,356 - BWI76_RS14155 0.82 -1.3 2,962,457 - -0.7 2,962,690 - BWI76_RS14160 0.15 +0.1 2,962,964 + BWI76_RS14160 0.43 -0.3 2,963,020 - BWI76_RS14160 0.49 +0.1 2,963,198 - BWI76_RS14160 0.67 -0.7 2,963,241 + BWI76_RS14160 0.72 +0.0 2,963,375 + BWI76_RS14160 0.86 -1.3 2,963,388 + BWI76_RS14160 0.87 -0.4 2,963,481 + -0.2 2,963,481 + -0.6
Or see this region's nucleotide sequence