Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13470 and BWI76_RS13475 overlap by 4 nucleotides BWI76_RS13475 and BWI76_RS13480 are separated by 276 nucleotides BWI76_RS13480 and BWI76_RS13485 are separated by 65 nucleotides
BWI76_RS13470: BWI76_RS13470 - transporter, at 2,809,041 to 2,809,490
_RS13470
BWI76_RS13475: BWI76_RS13475 - N-acetyltransferase, at 2,809,487 to 2,810,005
_RS13475
BWI76_RS13480: BWI76_RS13480 - XRE family transcriptional regulator, at 2,810,282 to 2,810,857
_RS13480
BWI76_RS13485: BWI76_RS13485 - NADP-dependent oxidoreductase, at 2,810,923 to 2,811,960
_RS13485
Position (kb) 2810
2811 Strain fitness (log2 ratio) -1
0
1 at 2809.585 kb on + strand at 2809.723 kb on - strand, within BWI76_RS13475 at 2810.105 kb on + strand at 2810.768 kb on - strand, within BWI76_RS13480 at 2811.278 kb on + strand, within BWI76_RS13485 at 2811.343 kb on - strand, within BWI76_RS13485 at 2811.413 kb on - strand, within BWI76_RS13485 at 2811.521 kb on - strand, within BWI76_RS13485
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 2,809,585 + +0.5 2,809,723 - BWI76_RS13475 0.45 -0.2 2,810,105 + -0.6 2,810,768 - BWI76_RS13480 0.84 +0.2 2,811,278 + BWI76_RS13485 0.34 +0.1 2,811,343 - BWI76_RS13485 0.40 -0.5 2,811,413 - BWI76_RS13485 0.47 -0.4 2,811,521 - BWI76_RS13485 0.58 -0.6
Or see this region's nucleotide sequence