Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11200 and BWI76_RS11205 are separated by 167 nucleotides BWI76_RS11205 and BWI76_RS11210 are separated by 296 nucleotides
BWI76_RS11200: BWI76_RS11200 - transpeptidase, at 2,360,690 to 2,361,649
_RS11200
BWI76_RS11205: BWI76_RS11205 - transcription-repair coupling factor, at 2,361,817 to 2,365,263
_RS11205
BWI76_RS11210: BWI76_RS11210 - outer membrane-specific lipoprotein transporter subunit LolC, at 2,365,560 to 2,366,768
_RS11210
Position (kb)
2361
2362
2363
2364
2365
2366 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2361.103 kb on - strand, within BWI76_RS11200 at 2361.289 kb on + strand, within BWI76_RS11200 at 2361.427 kb on + strand, within BWI76_RS11200 at 2361.446 kb on - strand, within BWI76_RS11200 at 2361.446 kb on - strand, within BWI76_RS11200 at 2362.876 kb on - strand at 2363.114 kb on - strand, within BWI76_RS11205 at 2363.127 kb on + strand, within BWI76_RS11205 at 2363.127 kb on + strand, within BWI76_RS11205 at 2363.172 kb on + strand, within BWI76_RS11205 at 2363.965 kb on + strand, within BWI76_RS11205 at 2364.250 kb on - strand, within BWI76_RS11205 at 2364.730 kb on - strand, within BWI76_RS11205
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 2,361,103 - BWI76_RS11200 0.43 +0.0 2,361,289 + BWI76_RS11200 0.62 +1.5 2,361,427 + BWI76_RS11200 0.77 -0.8 2,361,446 - BWI76_RS11200 0.79 -2.4 2,361,446 - BWI76_RS11200 0.79 +1.1 2,362,876 - +1.5 2,363,114 - BWI76_RS11205 0.38 -1.8 2,363,127 + BWI76_RS11205 0.38 -3.4 2,363,127 + BWI76_RS11205 0.38 -0.6 2,363,172 + BWI76_RS11205 0.39 +0.5 2,363,965 + BWI76_RS11205 0.62 -1.0 2,364,250 - BWI76_RS11205 0.71 -0.3 2,364,730 - BWI76_RS11205 0.85 -3.1
Or see this region's nucleotide sequence