Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10860

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10855 and BWI76_RS10860 overlap by 4 nucleotidesBWI76_RS10860 and BWI76_RS10865 are separated by 288 nucleotidesBWI76_RS10865 and BWI76_RS10870 are separated by 145 nucleotides BWI76_RS10855: BWI76_RS10855 - RND family efflux transporter MFP subunit, at 2,293,384 to 2,294,532 _RS10855 BWI76_RS10860: BWI76_RS10860 - ACR family transporter, at 2,294,529 to 2,297,603 _RS10860 BWI76_RS10865: BWI76_RS10865 - tRNA-Ser, at 2,297,892 to 2,297,979 _RS10865 BWI76_RS10870: BWI76_RS10870 - nicotinamidase, at 2,298,125 to 2,298,802 _RS10870 Position (kb) 2294 2295 2296 2297 2298Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2293.656 kb on + strand, within BWI76_RS10855at 2294.037 kb on - strand, within BWI76_RS10855at 2294.638 kb on + strandat 2294.638 kb on + strandat 2294.644 kb on - strandat 2295.155 kb on - strandat 2295.263 kb on - strand, within BWI76_RS10860at 2295.496 kb on + strand, within BWI76_RS10860at 2295.496 kb on + strand, within BWI76_RS10860at 2295.496 kb on + strand, within BWI76_RS10860at 2295.901 kb on + strand, within BWI76_RS10860at 2296.007 kb on - strand, within BWI76_RS10860at 2296.017 kb on - strand, within BWI76_RS10860at 2296.201 kb on + strand, within BWI76_RS10860at 2296.611 kb on + strand, within BWI76_RS10860at 2296.735 kb on - strand, within BWI76_RS10860at 2296.735 kb on - strand, within BWI76_RS10860at 2296.901 kb on + strand, within BWI76_RS10860at 2297.067 kb on - strand, within BWI76_RS10860at 2297.198 kb on + strand, within BWI76_RS10860at 2297.455 kb on + strandat 2297.629 kb on - strandat 2298.029 kb on - strandat 2298.309 kb on - strand, within BWI76_RS10870at 2298.319 kb on - strand, within BWI76_RS10870

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
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2,293,656 + BWI76_RS10855 0.24 +0.0
2,294,037 - BWI76_RS10855 0.57 -0.2
2,294,638 + +0.9
2,294,638 + +0.7
2,294,644 - -0.5
2,295,155 - +2.1
2,295,263 - BWI76_RS10860 0.24 -3.0
2,295,496 + BWI76_RS10860 0.31 -2.7
2,295,496 + BWI76_RS10860 0.31 -1.8
2,295,496 + BWI76_RS10860 0.31 -0.6
2,295,901 + BWI76_RS10860 0.45 -1.4
2,296,007 - BWI76_RS10860 0.48 -0.2
2,296,017 - BWI76_RS10860 0.48 -1.1
2,296,201 + BWI76_RS10860 0.54 -1.3
2,296,611 + BWI76_RS10860 0.68 -1.3
2,296,735 - BWI76_RS10860 0.72 -0.4
2,296,735 - BWI76_RS10860 0.72 -0.0
2,296,901 + BWI76_RS10860 0.77 -0.9
2,297,067 - BWI76_RS10860 0.83 -1.3
2,297,198 + BWI76_RS10860 0.87 -1.8
2,297,455 + +0.5
2,297,629 - -0.3
2,298,029 - -0.1
2,298,309 - BWI76_RS10870 0.27 +0.2
2,298,319 - BWI76_RS10870 0.29 -1.1

Or see this region's nucleotide sequence