Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10855 and BWI76_RS10860 overlap by 4 nucleotides BWI76_RS10860 and BWI76_RS10865 are separated by 288 nucleotides BWI76_RS10865 and BWI76_RS10870 are separated by 145 nucleotides
BWI76_RS10855: BWI76_RS10855 - RND family efflux transporter MFP subunit, at 2,293,384 to 2,294,532
_RS10855
BWI76_RS10860: BWI76_RS10860 - ACR family transporter, at 2,294,529 to 2,297,603
_RS10860
BWI76_RS10865: BWI76_RS10865 - tRNA-Ser, at 2,297,892 to 2,297,979
_RS10865
BWI76_RS10870: BWI76_RS10870 - nicotinamidase, at 2,298,125 to 2,298,802
_RS10870
Position (kb)
2294
2295
2296
2297
2298 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2293.656 kb on + strand, within BWI76_RS10855 at 2294.037 kb on - strand, within BWI76_RS10855 at 2294.638 kb on + strand at 2294.638 kb on + strand at 2294.644 kb on - strand at 2295.155 kb on - strand at 2295.263 kb on - strand, within BWI76_RS10860 at 2295.496 kb on + strand, within BWI76_RS10860 at 2295.496 kb on + strand, within BWI76_RS10860 at 2295.496 kb on + strand, within BWI76_RS10860 at 2295.901 kb on + strand, within BWI76_RS10860 at 2296.007 kb on - strand, within BWI76_RS10860 at 2296.017 kb on - strand, within BWI76_RS10860 at 2296.201 kb on + strand, within BWI76_RS10860 at 2296.611 kb on + strand, within BWI76_RS10860 at 2296.735 kb on - strand, within BWI76_RS10860 at 2296.735 kb on - strand, within BWI76_RS10860 at 2296.901 kb on + strand, within BWI76_RS10860 at 2297.067 kb on - strand, within BWI76_RS10860 at 2297.198 kb on + strand, within BWI76_RS10860 at 2297.455 kb on + strand at 2297.629 kb on - strand at 2298.029 kb on - strand at 2298.309 kb on - strand, within BWI76_RS10870 at 2298.319 kb on - strand, within BWI76_RS10870
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 2,293,656 + BWI76_RS10855 0.24 +0.0 2,294,037 - BWI76_RS10855 0.57 -0.2 2,294,638 + +0.9 2,294,638 + +0.7 2,294,644 - -0.5 2,295,155 - +2.1 2,295,263 - BWI76_RS10860 0.24 -3.0 2,295,496 + BWI76_RS10860 0.31 -2.7 2,295,496 + BWI76_RS10860 0.31 -1.8 2,295,496 + BWI76_RS10860 0.31 -0.6 2,295,901 + BWI76_RS10860 0.45 -1.4 2,296,007 - BWI76_RS10860 0.48 -0.2 2,296,017 - BWI76_RS10860 0.48 -1.1 2,296,201 + BWI76_RS10860 0.54 -1.3 2,296,611 + BWI76_RS10860 0.68 -1.3 2,296,735 - BWI76_RS10860 0.72 -0.4 2,296,735 - BWI76_RS10860 0.72 -0.0 2,296,901 + BWI76_RS10860 0.77 -0.9 2,297,067 - BWI76_RS10860 0.83 -1.3 2,297,198 + BWI76_RS10860 0.87 -1.8 2,297,455 + +0.5 2,297,629 - -0.3 2,298,029 - -0.1 2,298,309 - BWI76_RS10870 0.27 +0.2 2,298,319 - BWI76_RS10870 0.29 -1.1
Or see this region's nucleotide sequence