Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10285 and BWI76_RS10290 are separated by 191 nucleotides BWI76_RS10290 and BWI76_RS10295 are separated by 51 nucleotides
BWI76_RS10285: BWI76_RS10285 - family 3 extracellular solute-binding protein, at 2,177,825 to 2,178,637
_RS10285
BWI76_RS10290: BWI76_RS10290 - transcriptional regulator, at 2,178,829 to 2,179,725
_RS10290
BWI76_RS10295: BWI76_RS10295 - short chain dehydrogenase/reductase family oxidoreductase, at 2,179,777 to 2,180,562
_RS10295
Position (kb)
2178
2179
2180 Strain fitness (log2 ratio)
-1
0
1
2 at 2177.981 kb on - strand, within BWI76_RS10285 at 2178.350 kb on - strand, within BWI76_RS10285 at 2178.471 kb on + strand, within BWI76_RS10285 at 2178.488 kb on - strand, within BWI76_RS10285 at 2178.842 kb on - strand at 2179.198 kb on + strand, within BWI76_RS10290 at 2179.198 kb on + strand, within BWI76_RS10290 at 2179.206 kb on - strand, within BWI76_RS10290 at 2179.206 kb on - strand, within BWI76_RS10290 at 2179.255 kb on + strand, within BWI76_RS10290 at 2179.499 kb on + strand, within BWI76_RS10290 at 2179.507 kb on - strand at 2179.520 kb on + strand at 2179.622 kb on + strand, within BWI76_RS10290 at 2180.288 kb on + strand, within BWI76_RS10295 at 2180.309 kb on + strand, within BWI76_RS10295 at 2180.453 kb on - strand, within BWI76_RS10295 at 2180.466 kb on - strand, within BWI76_RS10295
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 2,177,981 - BWI76_RS10285 0.19 +0.3 2,178,350 - BWI76_RS10285 0.65 +1.8 2,178,471 + BWI76_RS10285 0.79 -0.6 2,178,488 - BWI76_RS10285 0.82 -0.7 2,178,842 - -0.6 2,179,198 + BWI76_RS10290 0.41 +0.9 2,179,198 + BWI76_RS10290 0.41 -0.2 2,179,206 - BWI76_RS10290 0.42 -0.4 2,179,206 - BWI76_RS10290 0.42 +0.7 2,179,255 + BWI76_RS10290 0.47 +0.5 2,179,499 + BWI76_RS10290 0.75 -0.4 2,179,507 - +1.2 2,179,520 + +0.7 2,179,622 + BWI76_RS10290 0.88 +0.5 2,180,288 + BWI76_RS10295 0.65 +0.2 2,180,309 + BWI76_RS10295 0.68 -0.5 2,180,453 - BWI76_RS10295 0.86 +0.6 2,180,466 - BWI76_RS10295 0.88 -1.2
Or see this region's nucleotide sequence