Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27330

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27320 and BWI76_RS27325 overlap by 4 nucleotidesBWI76_RS27325 and BWI76_RS27330 are separated by 100 nucleotidesBWI76_RS27330 and BWI76_RS27335 are separated by 63 nucleotides BWI76_RS27320: BWI76_RS27320 - glucosyl transferase, at 5,670,845 to 5,671,621 _RS27320 BWI76_RS27325: BWI76_RS27325 - pantetheine-phosphate adenylyltransferase, at 5,671,618 to 5,672,094 _RS27325 BWI76_RS27330: BWI76_RS27330 - DNA-formamidopyrimidine glycosylase, at 5,672,195 to 5,673,004 _RS27330 BWI76_RS27335: BWI76_RS27335 - hypothetical protein, at 5,673,068 to 5,675,404 _RS27335 Position (kb) 5672 5673 5674Strain fitness (log2 ratio) -1 0 1at 5672.233 kb on + strandat 5672.241 kb on - strandat 5672.371 kb on + strand, within BWI76_RS27330at 5672.540 kb on - strand, within BWI76_RS27330at 5672.586 kb on + strand, within BWI76_RS27330at 5672.688 kb on + strand, within BWI76_RS27330at 5672.752 kb on + strand, within BWI76_RS27330at 5672.911 kb on - strand, within BWI76_RS27330at 5672.967 kb on - strandat 5673.055 kb on - strandat 5673.244 kb on + strandat 5673.416 kb on + strand, within BWI76_RS27335at 5673.449 kb on + strand, within BWI76_RS27335at 5673.604 kb on + strand, within BWI76_RS27335at 5673.650 kb on - strand, within BWI76_RS27335at 5673.703 kb on + strand, within BWI76_RS27335at 5673.758 kb on + strand, within BWI76_RS27335at 5673.809 kb on + strand, within BWI76_RS27335at 5673.874 kb on + strand, within BWI76_RS27335

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
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5,672,233 + -0.7
5,672,241 - +0.6
5,672,371 + BWI76_RS27330 0.22 -0.2
5,672,540 - BWI76_RS27330 0.43 -0.2
5,672,586 + BWI76_RS27330 0.48 -0.1
5,672,688 + BWI76_RS27330 0.61 -0.1
5,672,752 + BWI76_RS27330 0.69 +0.3
5,672,911 - BWI76_RS27330 0.88 +0.4
5,672,967 - -0.0
5,673,055 - -0.1
5,673,244 + +0.2
5,673,416 + BWI76_RS27335 0.15 -0.5
5,673,449 + BWI76_RS27335 0.16 +0.1
5,673,604 + BWI76_RS27335 0.23 -1.0
5,673,650 - BWI76_RS27335 0.25 -0.4
5,673,703 + BWI76_RS27335 0.27 -0.2
5,673,758 + BWI76_RS27335 0.30 +0.7
5,673,809 + BWI76_RS27335 0.32 -0.0
5,673,874 + BWI76_RS27335 0.34 -0.2

Or see this region's nucleotide sequence