Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27320 and BWI76_RS27325 overlap by 4 nucleotides BWI76_RS27325 and BWI76_RS27330 are separated by 100 nucleotides BWI76_RS27330 and BWI76_RS27335 are separated by 63 nucleotides
BWI76_RS27320: BWI76_RS27320 - glucosyl transferase, at 5,670,845 to 5,671,621
_RS27320
BWI76_RS27325: BWI76_RS27325 - pantetheine-phosphate adenylyltransferase, at 5,671,618 to 5,672,094
_RS27325
BWI76_RS27330: BWI76_RS27330 - DNA-formamidopyrimidine glycosylase, at 5,672,195 to 5,673,004
_RS27330
BWI76_RS27335: BWI76_RS27335 - hypothetical protein, at 5,673,068 to 5,675,404
_RS27335
Position (kb)
5672
5673
5674 Strain fitness (log2 ratio)
-1
0
1 at 5672.233 kb on + strand at 5672.241 kb on - strand at 5672.371 kb on + strand, within BWI76_RS27330 at 5672.540 kb on - strand, within BWI76_RS27330 at 5672.586 kb on + strand, within BWI76_RS27330 at 5672.688 kb on + strand, within BWI76_RS27330 at 5672.752 kb on + strand, within BWI76_RS27330 at 5672.911 kb on - strand, within BWI76_RS27330 at 5672.967 kb on - strand at 5673.055 kb on - strand at 5673.244 kb on + strand at 5673.416 kb on + strand, within BWI76_RS27335 at 5673.449 kb on + strand, within BWI76_RS27335 at 5673.604 kb on + strand, within BWI76_RS27335 at 5673.650 kb on - strand, within BWI76_RS27335 at 5673.703 kb on + strand, within BWI76_RS27335 at 5673.758 kb on + strand, within BWI76_RS27335 at 5673.809 kb on + strand, within BWI76_RS27335 at 5673.874 kb on + strand, within BWI76_RS27335
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 5,672,233 + -0.7 5,672,241 - +0.6 5,672,371 + BWI76_RS27330 0.22 -0.2 5,672,540 - BWI76_RS27330 0.43 -0.2 5,672,586 + BWI76_RS27330 0.48 -0.1 5,672,688 + BWI76_RS27330 0.61 -0.1 5,672,752 + BWI76_RS27330 0.69 +0.3 5,672,911 - BWI76_RS27330 0.88 +0.4 5,672,967 - -0.0 5,673,055 - -0.1 5,673,244 + +0.2 5,673,416 + BWI76_RS27335 0.15 -0.5 5,673,449 + BWI76_RS27335 0.16 +0.1 5,673,604 + BWI76_RS27335 0.23 -1.0 5,673,650 - BWI76_RS27335 0.25 -0.4 5,673,703 + BWI76_RS27335 0.27 -0.2 5,673,758 + BWI76_RS27335 0.30 +0.7 5,673,809 + BWI76_RS27335 0.32 -0.0 5,673,874 + BWI76_RS27335 0.34 -0.2
Or see this region's nucleotide sequence