Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21370 and BWI76_RS21375 are separated by 44 nucleotides BWI76_RS21375 and BWI76_RS21380 are separated by 311 nucleotides BWI76_RS21380 and BWI76_RS21385 are separated by 55 nucleotides
BWI76_RS21370: BWI76_RS21370 - ATP-dependent RNA helicase SrmB, at 4,473,569 to 4,474,900
_RS21370
BWI76_RS21375: BWI76_RS21375 - autonomous glycyl radical cofactor GrcA, at 4,474,945 to 4,475,328
_RS21375
BWI76_RS21380: BWI76_RS21380 - uracil-DNA glycosylase, at 4,475,640 to 4,476,329
_RS21380
BWI76_RS21385: BWI76_RS21385 - tRNA/rRNA methyltransferase, at 4,476,385 to 4,477,458
_RS21385
Position (kb) 4475
4476
4477 Strain fitness (log2 ratio) -1
0
1 at 4475.120 kb on - strand, within BWI76_RS21375 at 4475.276 kb on - strand, within BWI76_RS21375 at 4475.409 kb on - strand at 4475.499 kb on + strand at 4475.796 kb on - strand, within BWI76_RS21380 at 4475.819 kb on - strand, within BWI76_RS21380 at 4476.449 kb on - strand at 4476.457 kb on - strand at 4476.489 kb on - strand at 4476.489 kb on - strand at 4476.566 kb on + strand, within BWI76_RS21385 at 4476.574 kb on - strand, within BWI76_RS21385 at 4476.862 kb on - strand, within BWI76_RS21385 at 4477.005 kb on + strand, within BWI76_RS21385 at 4477.019 kb on - strand, within BWI76_RS21385 at 4477.205 kb on - strand, within BWI76_RS21385 at 4477.231 kb on - strand, within BWI76_RS21385
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 4,475,120 - BWI76_RS21375 0.46 -0.3 4,475,276 - BWI76_RS21375 0.86 +0.3 4,475,409 - -1.4 4,475,499 + -0.1 4,475,796 - BWI76_RS21380 0.23 -0.4 4,475,819 - BWI76_RS21380 0.26 +0.0 4,476,449 - -1.5 4,476,457 - -0.0 4,476,489 - -1.4 4,476,489 - +0.1 4,476,566 + BWI76_RS21385 0.17 -1.4 4,476,574 - BWI76_RS21385 0.18 -0.2 4,476,862 - BWI76_RS21385 0.44 +0.1 4,477,005 + BWI76_RS21385 0.58 -0.8 4,477,019 - BWI76_RS21385 0.59 -0.9 4,477,205 - BWI76_RS21385 0.76 -0.1 4,477,231 - BWI76_RS21385 0.79 -0.0
Or see this region's nucleotide sequence