Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20925 and BWI76_RS20930 are separated by 9 nucleotides BWI76_RS20930 and BWI76_RS20935 are separated by 28 nucleotides BWI76_RS20935 and BWI76_RS20940 are separated by 71 nucleotides
BWI76_RS20925: BWI76_RS20925 - peptidase M48, at 4,374,919 to 4,376,382
_RS20925
BWI76_RS20930: BWI76_RS20930 - arsenate reductase (glutaredoxin), at 4,376,392 to 4,376,751
_RS20930
BWI76_RS20935: BWI76_RS20935 - DnaA regulatory inactivator Hda, at 4,376,780 to 4,377,505
_RS20935
BWI76_RS20940: BWI76_RS20940 - uracil/xanthine transporter, at 4,377,577 to 4,378,866
_RS20940
Position (kb) 4376
4377
4378 Strain fitness (log2 ratio) -1
0
1 at 4375.849 kb on + strand, within BWI76_RS20925 at 4375.860 kb on - strand, within BWI76_RS20925 at 4375.877 kb on - strand, within BWI76_RS20925 at 4376.118 kb on + strand, within BWI76_RS20925 at 4376.308 kb on - strand at 4376.437 kb on - strand, within BWI76_RS20930 at 4376.447 kb on + strand, within BWI76_RS20930 at 4376.761 kb on + strand at 4377.517 kb on + strand at 4377.548 kb on - strand at 4377.568 kb on + strand at 4377.576 kb on - strand at 4377.703 kb on - strand at 4377.768 kb on - strand, within BWI76_RS20940 at 4378.272 kb on + strand, within BWI76_RS20940
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 4,375,849 + BWI76_RS20925 0.64 -1.1 4,375,860 - BWI76_RS20925 0.64 -1.5 4,375,877 - BWI76_RS20925 0.65 -1.4 4,376,118 + BWI76_RS20925 0.82 -0.0 4,376,308 - -1.0 4,376,437 - BWI76_RS20930 0.12 +1.0 4,376,447 + BWI76_RS20930 0.15 -1.0 4,376,761 + -0.1 4,377,517 + -0.1 4,377,548 - -0.5 4,377,568 + -0.3 4,377,576 - -0.7 4,377,703 - +0.7 4,377,768 - BWI76_RS20940 0.15 -0.9 4,378,272 + BWI76_RS20940 0.54 -1.7
Or see this region's nucleotide sequence