Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18780 and BWI76_RS18785 are separated by 180 nucleotides BWI76_RS18785 and BWI76_RS18790 are separated by 104 nucleotides
BWI76_RS18780: BWI76_RS18780 - D-alanyl-D-alanine carboxypeptidase, at 3,891,935 to 3,893,101
_RS18780
BWI76_RS18785: BWI76_RS18785 - exodeoxyribonuclease I, at 3,893,282 to 3,894,706
_RS18785
BWI76_RS18790: BWI76_RS18790 - elongation factor G, at 3,894,811 to 3,896,913
_RS18790
Position (kb)
3893
3894
3895 Strain fitness (log2 ratio)
-2
-1
0
1 at 3892.470 kb on - strand, within BWI76_RS18780 at 3892.495 kb on - strand, within BWI76_RS18780 at 3892.736 kb on + strand, within BWI76_RS18780 at 3893.201 kb on + strand at 3893.209 kb on - strand at 3893.282 kb on + strand at 3893.466 kb on + strand, within BWI76_RS18785 at 3893.730 kb on + strand, within BWI76_RS18785 at 3894.055 kb on + strand, within BWI76_RS18785 at 3894.063 kb on - strand, within BWI76_RS18785 at 3894.553 kb on + strand, within BWI76_RS18785 at 3894.667 kb on + strand at 3894.667 kb on + strand at 3894.796 kb on - strand at 3894.911 kb on + strand at 3895.005 kb on - strand at 3895.166 kb on - strand, within BWI76_RS18790 at 3895.274 kb on + strand, within BWI76_RS18790 at 3895.358 kb on - strand, within BWI76_RS18790 at 3895.365 kb on + strand, within BWI76_RS18790 at 3895.572 kb on - strand, within BWI76_RS18790
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 3,892,470 - BWI76_RS18780 0.46 +0.4 3,892,495 - BWI76_RS18780 0.48 +0.6 3,892,736 + BWI76_RS18780 0.69 -2.3 3,893,201 + +0.2 3,893,209 - -0.8 3,893,282 + +0.7 3,893,466 + BWI76_RS18785 0.13 -0.4 3,893,730 + BWI76_RS18785 0.31 -0.6 3,894,055 + BWI76_RS18785 0.54 -0.3 3,894,063 - BWI76_RS18785 0.55 -1.1 3,894,553 + BWI76_RS18785 0.89 +0.0 3,894,667 + +0.3 3,894,667 + +0.1 3,894,796 - -2.3 3,894,911 + +0.1 3,895,005 - -0.5 3,895,166 - BWI76_RS18790 0.17 -0.0 3,895,274 + BWI76_RS18790 0.22 -0.6 3,895,358 - BWI76_RS18790 0.26 -2.0 3,895,365 + BWI76_RS18790 0.26 -0.5 3,895,572 - BWI76_RS18790 0.36 -0.7
Or see this region's nucleotide sequence