Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16375 and BWI76_RS16380 are separated by 3 nucleotides BWI76_RS16380 and BWI76_RS16385 are separated by 1 nucleotides BWI76_RS16385 and BWI76_RS16390 are separated by 596 nucleotides
BWI76_RS16375: BWI76_RS16375 - electron transport complex subunit G, at 3,397,878 to 3,398,498
_RS16375
BWI76_RS16380: BWI76_RS16380 - electron transport complex subunit RsxE, at 3,398,502 to 3,399,200
_RS16380
BWI76_RS16385: BWI76_RS16385 - endonuclease III, at 3,399,202 to 3,399,837
_RS16385
BWI76_RS16390: BWI76_RS16390 - dipeptide/tripeptide permease A, at 3,400,434 to 3,401,939
_RS16390
Position (kb)
3399
3400 Strain fitness (log2 ratio)
-2
-1
0
1 at 3398.406 kb on - strand, within BWI76_RS16375 at 3398.447 kb on - strand at 3398.628 kb on - strand, within BWI76_RS16380 at 3398.759 kb on + strand, within BWI76_RS16380 at 3399.711 kb on + strand, within BWI76_RS16385 at 3400.267 kb on - strand at 3400.308 kb on - strand at 3400.448 kb on + strand at 3400.488 kb on - strand at 3400.817 kb on + strand, within BWI76_RS16390 at 3400.817 kb on + strand, within BWI76_RS16390 at 3400.825 kb on - strand, within BWI76_RS16390
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 3,398,406 - BWI76_RS16375 0.85 -2.4 3,398,447 - +0.5 3,398,628 - BWI76_RS16380 0.18 -2.2 3,398,759 + BWI76_RS16380 0.37 -0.8 3,399,711 + BWI76_RS16385 0.80 -0.7 3,400,267 - +1.3 3,400,308 - -1.0 3,400,448 + +0.8 3,400,488 - -0.6 3,400,817 + BWI76_RS16390 0.25 +0.5 3,400,817 + BWI76_RS16390 0.25 -0.6 3,400,825 - BWI76_RS16390 0.26 -0.4
Or see this region's nucleotide sequence