Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16385

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16375 and BWI76_RS16380 are separated by 3 nucleotidesBWI76_RS16380 and BWI76_RS16385 are separated by 1 nucleotidesBWI76_RS16385 and BWI76_RS16390 are separated by 596 nucleotides BWI76_RS16375: BWI76_RS16375 - electron transport complex subunit G, at 3,397,878 to 3,398,498 _RS16375 BWI76_RS16380: BWI76_RS16380 - electron transport complex subunit RsxE, at 3,398,502 to 3,399,200 _RS16380 BWI76_RS16385: BWI76_RS16385 - endonuclease III, at 3,399,202 to 3,399,837 _RS16385 BWI76_RS16390: BWI76_RS16390 - dipeptide/tripeptide permease A, at 3,400,434 to 3,401,939 _RS16390 Position (kb) 3399 3400Strain fitness (log2 ratio) -2 -1 0 1at 3398.406 kb on - strand, within BWI76_RS16375at 3398.447 kb on - strandat 3398.628 kb on - strand, within BWI76_RS16380at 3398.759 kb on + strand, within BWI76_RS16380at 3399.711 kb on + strand, within BWI76_RS16385at 3400.267 kb on - strandat 3400.308 kb on - strandat 3400.448 kb on + strandat 3400.488 kb on - strandat 3400.817 kb on + strand, within BWI76_RS16390at 3400.817 kb on + strand, within BWI76_RS16390at 3400.825 kb on - strand, within BWI76_RS16390

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
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3,398,406 - BWI76_RS16375 0.85 -2.4
3,398,447 - +0.5
3,398,628 - BWI76_RS16380 0.18 -2.2
3,398,759 + BWI76_RS16380 0.37 -0.8
3,399,711 + BWI76_RS16385 0.80 -0.7
3,400,267 - +1.3
3,400,308 - -1.0
3,400,448 + +0.8
3,400,488 - -0.6
3,400,817 + BWI76_RS16390 0.25 +0.5
3,400,817 + BWI76_RS16390 0.25 -0.6
3,400,825 - BWI76_RS16390 0.26 -0.4

Or see this region's nucleotide sequence