Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13165 and BWI76_RS13170 are separated by 48 nucleotides BWI76_RS13170 and BWI76_RS13175 are separated by 15 nucleotides BWI76_RS13175 and BWI76_RS13180 overlap by 4 nucleotides
BWI76_RS13165: BWI76_RS13165 - ATP-dependent RNA helicase HrpA, at 2,744,380 to 2,748,282
_RS13165
BWI76_RS13170: BWI76_RS13170 - methyltransferase, at 2,748,331 to 2,748,990
_RS13170
BWI76_RS13175: BWI76_RS13175 - NodT family RND efflux system outer membrane lipoprotein, at 2,749,006 to 2,750,385
_RS13175
BWI76_RS13180: BWI76_RS13180 - multidrug transporter EmrA, at 2,750,382 to 2,751,467
_RS13180
Position (kb)
2749
2750
2751 Strain fitness (log2 ratio)
-2
-1
0
1 at 2748.216 kb on + strand at 2748.513 kb on + strand, within BWI76_RS13170 at 2748.726 kb on + strand, within BWI76_RS13170 at 2748.768 kb on - strand, within BWI76_RS13170 at 2749.948 kb on + strand, within BWI76_RS13175 at 2750.018 kb on + strand, within BWI76_RS13175 at 2750.018 kb on + strand, within BWI76_RS13175 at 2750.911 kb on + strand, within BWI76_RS13180 at 2750.945 kb on - strand, within BWI76_RS13180 at 2751.173 kb on + strand, within BWI76_RS13180 at 2751.181 kb on - strand, within BWI76_RS13180
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 2,748,216 + -0.3 2,748,513 + BWI76_RS13170 0.28 -0.3 2,748,726 + BWI76_RS13170 0.60 -1.5 2,748,768 - BWI76_RS13170 0.66 -0.4 2,749,948 + BWI76_RS13175 0.68 -0.7 2,750,018 + BWI76_RS13175 0.73 -1.0 2,750,018 + BWI76_RS13175 0.73 -0.9 2,750,911 + BWI76_RS13180 0.49 -2.4 2,750,945 - BWI76_RS13180 0.52 +0.4 2,751,173 + BWI76_RS13180 0.73 -1.1 2,751,181 - BWI76_RS13180 0.74 +0.2
Or see this region's nucleotide sequence