Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11190 and BWI76_RS11195 are separated by 249 nucleotides BWI76_RS11195 and BWI76_RS11200 are separated by 218 nucleotides BWI76_RS11200 and BWI76_RS11205 are separated by 167 nucleotides
BWI76_RS11190: BWI76_RS11190 - putative TetR/AcrR family transcriptional regulatory protein, at 2,359,329 to 2,359,964
_RS11190
BWI76_RS11195: BWI76_RS11195 - multiple stress resistance protein BhsA, at 2,360,214 to 2,360,471
_RS11195
BWI76_RS11200: BWI76_RS11200 - transpeptidase, at 2,360,690 to 2,361,649
_RS11200
BWI76_RS11205: BWI76_RS11205 - transcription-repair coupling factor, at 2,361,817 to 2,365,263
_RS11205
Position (kb)
2360
2361
2362 Strain fitness (log2 ratio)
-1
0
1 at 2359.895 kb on - strand, within BWI76_RS11190 at 2360.202 kb on + strand at 2360.420 kb on + strand, within BWI76_RS11195 at 2360.529 kb on - strand at 2360.737 kb on + strand at 2361.103 kb on - strand, within BWI76_RS11200 at 2361.289 kb on + strand, within BWI76_RS11200 at 2361.427 kb on + strand, within BWI76_RS11200 at 2361.446 kb on - strand, within BWI76_RS11200 at 2361.446 kb on - strand, within BWI76_RS11200
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 2,359,895 - BWI76_RS11190 0.89 -0.7 2,360,202 + -0.3 2,360,420 + BWI76_RS11195 0.80 -0.1 2,360,529 - +0.5 2,360,737 + +0.3 2,361,103 - BWI76_RS11200 0.43 -1.0 2,361,289 + BWI76_RS11200 0.62 -0.1 2,361,427 + BWI76_RS11200 0.77 -1.6 2,361,446 - BWI76_RS11200 0.79 +0.2 2,361,446 - BWI76_RS11200 0.79 -0.6
Or see this region's nucleotide sequence