Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10030 and BWI76_RS10035 are separated by 42 nucleotides BWI76_RS10035 and BWI76_RS10040 are separated by 36 nucleotides BWI76_RS10040 and BWI76_RS10045 are separated by 60 nucleotides
BWI76_RS10030: BWI76_RS10030 - glycosyl transferase, at 2,123,790 to 2,126,933
_RS10030
BWI76_RS10035: BWI76_RS10035 - hypothetical protein, at 2,126,976 to 2,127,908
_RS10035
BWI76_RS10040: BWI76_RS10040 - heat-shock protein HspQ, at 2,127,945 to 2,128,262
_RS10040
BWI76_RS10045: BWI76_RS10045 - 23S rRNA (cytosine(1962)-C(5))-methyltransferase, at 2,128,323 to 2,129,525
_RS10045
Position (kb)
2126
2127
2128 Strain fitness (log2 ratio)
-2
-1
0
1 at 2126.146 kb on - strand, within BWI76_RS10030 at 2126.443 kb on + strand, within BWI76_RS10030 at 2126.451 kb on - strand, within BWI76_RS10030 at 2126.451 kb on - strand at 2126.503 kb on - strand, within BWI76_RS10030 at 2126.770 kb on + strand at 2126.859 kb on + strand at 2126.880 kb on + strand at 2126.888 kb on - strand at 2127.018 kb on - strand at 2127.267 kb on + strand, within BWI76_RS10035 at 2127.326 kb on + strand, within BWI76_RS10035 at 2127.835 kb on + strand at 2128.217 kb on - strand, within BWI76_RS10040 at 2128.495 kb on - strand, within BWI76_RS10045 at 2128.714 kb on - strand, within BWI76_RS10045 at 2128.762 kb on - strand, within BWI76_RS10045 at 2128.900 kb on - strand, within BWI76_RS10045
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 2,126,146 - BWI76_RS10030 0.75 -1.3 2,126,443 + BWI76_RS10030 0.84 -0.1 2,126,451 - BWI76_RS10030 0.85 -1.3 2,126,451 - +0.2 2,126,503 - BWI76_RS10030 0.86 -1.9 2,126,770 + -0.0 2,126,859 + +0.0 2,126,880 + +0.1 2,126,888 - -0.9 2,127,018 - -0.2 2,127,267 + BWI76_RS10035 0.31 -1.9 2,127,326 + BWI76_RS10035 0.38 -2.6 2,127,835 + +1.5 2,128,217 - BWI76_RS10040 0.86 -0.3 2,128,495 - BWI76_RS10045 0.14 -0.3 2,128,714 - BWI76_RS10045 0.33 +0.1 2,128,762 - BWI76_RS10045 0.36 +0.3 2,128,900 - BWI76_RS10045 0.48 -1.2
Or see this region's nucleotide sequence