Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01950 and BWI76_RS01955 are separated by 246 nucleotides BWI76_RS01955 and BWI76_RS01960 are separated by 86 nucleotides
BWI76_RS01950: BWI76_RS01950 - excinuclease ABC subunit A, at 395,886 to 398,711
_RS01950
BWI76_RS01955: BWI76_RS01955 - ssDNA-binding protein, at 398,958 to 399,485
_RS01955
BWI76_RS01960: BWI76_RS01960 - lytic transglycosylase F, at 399,572 to 401,098
_RS01960
Position (kb) 398
399
400 Strain fitness (log2 ratio) -2
-1
0
1 at 398.095 kb on - strand, within BWI76_RS01950 at 398.095 kb on - strand, within BWI76_RS01950 at 398.187 kb on + strand, within BWI76_RS01950 at 398.187 kb on + strand, within BWI76_RS01950 at 398.195 kb on - strand, within BWI76_RS01950 at 398.251 kb on - strand, within BWI76_RS01950 at 398.292 kb on - strand, within BWI76_RS01950 at 398.292 kb on - strand, within BWI76_RS01950 at 398.535 kb on + strand at 398.591 kb on - strand at 398.606 kb on - strand at 398.695 kb on + strand at 399.518 kb on - strand at 399.728 kb on - strand, within BWI76_RS01960 at 399.851 kb on + strand, within BWI76_RS01960 at 399.867 kb on + strand, within BWI76_RS01960 at 399.867 kb on - strand, within BWI76_RS01960 at 399.886 kb on - strand, within BWI76_RS01960 at 399.931 kb on + strand, within BWI76_RS01960 at 399.939 kb on - strand, within BWI76_RS01960 at 399.955 kb on - strand, within BWI76_RS01960 at 399.960 kb on - strand, within BWI76_RS01960 at 400.004 kb on + strand, within BWI76_RS01960 at 400.016 kb on - strand, within BWI76_RS01960 at 400.016 kb on - strand, within BWI76_RS01960 at 400.030 kb on + strand, within BWI76_RS01960 at 400.033 kb on + strand, within BWI76_RS01960 at 400.040 kb on + strand, within BWI76_RS01960 at 400.040 kb on + strand, within BWI76_RS01960 at 400.048 kb on - strand, within BWI76_RS01960 at 400.048 kb on - strand, within BWI76_RS01960 at 400.165 kb on + strand, within BWI76_RS01960 at 400.165 kb on + strand, within BWI76_RS01960 at 400.173 kb on - strand, within BWI76_RS01960 at 400.173 kb on - strand, within BWI76_RS01960 at 400.173 kb on - strand, within BWI76_RS01960 at 400.173 kb on - strand, within BWI76_RS01960 at 400.173 kb on - strand, within BWI76_RS01960 at 400.196 kb on - strand, within BWI76_RS01960 at 400.196 kb on - strand, within BWI76_RS01960 at 400.249 kb on + strand, within BWI76_RS01960 at 400.334 kb on + strand, within BWI76_RS01960 at 400.382 kb on + strand, within BWI76_RS01960 at 400.390 kb on - strand, within BWI76_RS01960 at 400.400 kb on - strand, within BWI76_RS01960
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 398,095 - BWI76_RS01950 0.78 -0.6 398,095 - BWI76_RS01950 0.78 -0.9 398,187 + BWI76_RS01950 0.81 -0.5 398,187 + BWI76_RS01950 0.81 -0.6 398,195 - BWI76_RS01950 0.82 -0.5 398,251 - BWI76_RS01950 0.84 -0.5 398,292 - BWI76_RS01950 0.85 -0.8 398,292 - BWI76_RS01950 0.85 -0.6 398,535 + -0.2 398,591 - -0.6 398,606 - -2.4 398,695 + -0.3 399,518 - -0.9 399,728 - BWI76_RS01960 0.10 -0.1 399,851 + BWI76_RS01960 0.18 -0.1 399,867 + BWI76_RS01960 0.19 -0.6 399,867 - BWI76_RS01960 0.19 -0.1 399,886 - BWI76_RS01960 0.21 +0.2 399,931 + BWI76_RS01960 0.24 -0.2 399,939 - BWI76_RS01960 0.24 +1.4 399,955 - BWI76_RS01960 0.25 +0.1 399,960 - BWI76_RS01960 0.25 +0.5 400,004 + BWI76_RS01960 0.28 -0.3 400,016 - BWI76_RS01960 0.29 -0.4 400,016 - BWI76_RS01960 0.29 -0.4 400,030 + BWI76_RS01960 0.30 -1.1 400,033 + BWI76_RS01960 0.30 -0.3 400,040 + BWI76_RS01960 0.31 +0.1 400,040 + BWI76_RS01960 0.31 -0.0 400,048 - BWI76_RS01960 0.31 +0.2 400,048 - BWI76_RS01960 0.31 +0.3 400,165 + BWI76_RS01960 0.39 -0.8 400,165 + BWI76_RS01960 0.39 -0.2 400,173 - BWI76_RS01960 0.39 -0.2 400,173 - BWI76_RS01960 0.39 +0.8 400,173 - BWI76_RS01960 0.39 -0.3 400,173 - BWI76_RS01960 0.39 +0.2 400,173 - BWI76_RS01960 0.39 -0.8 400,196 - BWI76_RS01960 0.41 -1.1 400,196 - BWI76_RS01960 0.41 +0.2 400,249 + BWI76_RS01960 0.44 -1.4 400,334 + BWI76_RS01960 0.50 +1.2 400,382 + BWI76_RS01960 0.53 -0.3 400,390 - BWI76_RS01960 0.54 -1.3 400,400 - BWI76_RS01960 0.54 -0.3
Or see this region's nucleotide sequence