Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22320 and BWI76_RS22325 are separated by 17 nucleotides BWI76_RS22325 and BWI76_RS22330 are separated by 2 nucleotides BWI76_RS22330 and BWI76_RS22335 overlap by 4 nucleotides BWI76_RS22335 and BWI76_RS22340 are separated by 82 nucleotides
BWI76_RS22320: BWI76_RS22320 - hydrogenase 3 large subunit, at 4,652,151 to 4,653,860
_RS22320
BWI76_RS22325: BWI76_RS22325 - hydrogenase 3 membrane subunit, at 4,653,878 to 4,654,801
_RS22325
BWI76_RS22330: BWI76_RS22330 - formate hydrogenlyase subunit 3, at 4,654,804 to 4,656,630
_RS22330
BWI76_RS22335: BWI76_RS22335 - 4Fe-4S ferredoxin, at 4,656,627 to 4,657,235
_RS22335
BWI76_RS22340: BWI76_RS22340 - formate hydrogenlyase regulatory protein HycA, at 4,657,318 to 4,657,767
_RS22340
Position (kb) 4654
4655
4656
4657 Strain fitness (log2 ratio) -2
-1
0
1 at 4653.956 kb on - strand at 4654.110 kb on + strand, within BWI76_RS22325 at 4654.128 kb on - strand, within BWI76_RS22325 at 4654.312 kb on - strand, within BWI76_RS22325 at 4654.328 kb on + strand, within BWI76_RS22325 at 4654.367 kb on - strand, within BWI76_RS22325 at 4654.576 kb on + strand, within BWI76_RS22325 at 4654.862 kb on + strand at 4655.163 kb on - strand, within BWI76_RS22330 at 4655.294 kb on - strand, within BWI76_RS22330 at 4655.321 kb on - strand, within BWI76_RS22330 at 4655.682 kb on - strand, within BWI76_RS22330 at 4655.909 kb on + strand, within BWI76_RS22330 at 4656.349 kb on - strand, within BWI76_RS22330 at 4656.400 kb on + strand, within BWI76_RS22330 at 4656.438 kb on + strand, within BWI76_RS22330 at 4656.474 kb on - strand at 4656.770 kb on - strand, within BWI76_RS22335 at 4656.836 kb on + strand, within BWI76_RS22335 at 4656.849 kb on - strand, within BWI76_RS22335 at 4656.883 kb on + strand, within BWI76_RS22335 at 4656.921 kb on - strand, within BWI76_RS22335 at 4657.292 kb on - strand at 4657.609 kb on - strand, within BWI76_RS22340
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 4,653,956 - -0.0 4,654,110 + BWI76_RS22325 0.25 -0.4 4,654,128 - BWI76_RS22325 0.27 -0.3 4,654,312 - BWI76_RS22325 0.47 -1.5 4,654,328 + BWI76_RS22325 0.49 -1.1 4,654,367 - BWI76_RS22325 0.53 -0.6 4,654,576 + BWI76_RS22325 0.76 -1.0 4,654,862 + +0.3 4,655,163 - BWI76_RS22330 0.20 -0.7 4,655,294 - BWI76_RS22330 0.27 -0.3 4,655,321 - BWI76_RS22330 0.28 -0.1 4,655,682 - BWI76_RS22330 0.48 -1.3 4,655,909 + BWI76_RS22330 0.60 -0.5 4,656,349 - BWI76_RS22330 0.85 +0.6 4,656,400 + BWI76_RS22330 0.87 -1.5 4,656,438 + BWI76_RS22330 0.89 -0.3 4,656,474 - +0.1 4,656,770 - BWI76_RS22335 0.23 -1.9 4,656,836 + BWI76_RS22335 0.34 -0.7 4,656,849 - BWI76_RS22335 0.36 -0.6 4,656,883 + BWI76_RS22335 0.42 +1.2 4,656,921 - BWI76_RS22335 0.48 -0.4 4,657,292 - -1.1 4,657,609 - BWI76_RS22340 0.65 -0.3
Or see this region's nucleotide sequence