Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12315 and BWI76_RS12320 are separated by 13 nucleotides BWI76_RS12320 and BWI76_RS12325 are separated by 93 nucleotides BWI76_RS12325 and BWI76_RS12330 overlap by 1 nucleotides BWI76_RS12330 and BWI76_RS12335 overlap by 14 nucleotides
BWI76_RS12315: BWI76_RS12315 - hypothetical protein, at 2,569,935 to 2,570,459
_RS12315
BWI76_RS12320: BWI76_RS12320 - hypothetical protein, at 2,570,473 to 2,570,847
_RS12320
BWI76_RS12325: BWI76_RS12325 - hypothetical protein, at 2,570,941 to 2,574,228
_RS12325
BWI76_RS12330: BWI76_RS12330 - hypothetical protein, at 2,574,228 to 2,574,701
_RS12330
BWI76_RS12335: BWI76_RS12335 - hypothetical protein, at 2,574,688 to 2,575,170
_RS12335
Position (kb)
2570
2571
2572
2573
2574
2575 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2570.305 kb on - strand, within BWI76_RS12315 at 2570.404 kb on + strand, within BWI76_RS12315 at 2570.421 kb on + strand at 2570.423 kb on + strand at 2570.423 kb on + strand at 2570.497 kb on + strand at 2570.507 kb on + strand at 2570.534 kb on - strand, within BWI76_RS12320 at 2570.587 kb on + strand, within BWI76_RS12320 at 2570.592 kb on + strand, within BWI76_RS12320 at 2570.605 kb on - strand, within BWI76_RS12320 at 2570.611 kb on + strand, within BWI76_RS12320 at 2570.624 kb on + strand, within BWI76_RS12320 at 2570.624 kb on + strand, within BWI76_RS12320 at 2570.634 kb on + strand, within BWI76_RS12320 at 2570.647 kb on + strand, within BWI76_RS12320 at 2570.676 kb on + strand, within BWI76_RS12320 at 2570.676 kb on + strand, within BWI76_RS12320 at 2570.680 kb on + strand at 2570.697 kb on + strand, within BWI76_RS12320 at 2570.700 kb on + strand, within BWI76_RS12320 at 2570.701 kb on + strand, within BWI76_RS12320 at 2570.707 kb on + strand, within BWI76_RS12320 at 2570.707 kb on + strand, within BWI76_RS12320 at 2570.707 kb on + strand, within BWI76_RS12320 at 2570.707 kb on + strand, within BWI76_RS12320 at 2570.745 kb on + strand, within BWI76_RS12320 at 2570.848 kb on + strand at 2570.971 kb on + strand at 2570.979 kb on - strand at 2570.979 kb on - strand at 2571.009 kb on + strand at 2571.051 kb on - strand at 2571.059 kb on - strand at 2571.103 kb on + strand at 2571.106 kb on - strand at 2571.157 kb on - strand at 2571.208 kb on + strand at 2571.302 kb on + strand, within BWI76_RS12325 at 2571.310 kb on - strand, within BWI76_RS12325 at 2571.368 kb on + strand at 2571.393 kb on + strand, within BWI76_RS12325 at 2571.486 kb on + strand, within BWI76_RS12325 at 2571.486 kb on + strand, within BWI76_RS12325 at 2571.494 kb on - strand, within BWI76_RS12325 at 2571.542 kb on + strand at 2571.550 kb on - strand, within BWI76_RS12325 at 2571.550 kb on - strand, within BWI76_RS12325 at 2571.550 kb on - strand, within BWI76_RS12325 at 2571.558 kb on + strand, within BWI76_RS12325 at 2571.560 kb on - strand, within BWI76_RS12325 at 2571.692 kb on + strand, within BWI76_RS12325 at 2571.699 kb on + strand, within BWI76_RS12325 at 2571.699 kb on + strand, within BWI76_RS12325 at 2571.699 kb on + strand, within BWI76_RS12325 at 2571.740 kb on - strand, within BWI76_RS12325 at 2571.773 kb on + strand, within BWI76_RS12325 at 2571.805 kb on - strand, within BWI76_RS12325 at 2571.814 kb on + strand, within BWI76_RS12325 at 2571.814 kb on + strand, within BWI76_RS12325 at 2571.814 kb on + strand, within BWI76_RS12325 at 2571.827 kb on - strand, within BWI76_RS12325 at 2571.922 kb on - strand, within BWI76_RS12325 at 2571.993 kb on + strand, within BWI76_RS12325 at 2572.056 kb on + strand, within BWI76_RS12325 at 2572.204 kb on + strand, within BWI76_RS12325 at 2572.290 kb on + strand, within BWI76_RS12325 at 2572.404 kb on + strand, within BWI76_RS12325 at 2572.433 kb on + strand, within BWI76_RS12325 at 2572.676 kb on - strand, within BWI76_RS12325 at 2572.773 kb on + strand, within BWI76_RS12325 at 2572.793 kb on + strand, within BWI76_RS12325 at 2572.829 kb on - strand, within BWI76_RS12325 at 2572.863 kb on + strand, within BWI76_RS12325 at 2572.863 kb on + strand, within BWI76_RS12325 at 2573.209 kb on - strand, within BWI76_RS12325 at 2573.216 kb on + strand, within BWI76_RS12325 at 2573.221 kb on - strand, within BWI76_RS12325 at 2573.278 kb on + strand at 2573.306 kb on + strand, within BWI76_RS12325 at 2573.333 kb on - strand, within BWI76_RS12325 at 2573.367 kb on + strand, within BWI76_RS12325 at 2573.374 kb on - strand, within BWI76_RS12325 at 2573.379 kb on - strand, within BWI76_RS12325 at 2573.384 kb on + strand, within BWI76_RS12325 at 2573.394 kb on + strand, within BWI76_RS12325 at 2573.461 kb on - strand, within BWI76_RS12325 at 2573.496 kb on - strand, within BWI76_RS12325 at 2573.522 kb on + strand, within BWI76_RS12325 at 2573.536 kb on - strand, within BWI76_RS12325 at 2573.630 kb on + strand, within BWI76_RS12325 at 2573.654 kb on - strand at 2573.900 kb on - strand at 2574.018 kb on - strand at 2574.080 kb on + strand at 2574.081 kb on - strand at 2574.088 kb on - strand at 2574.088 kb on - strand at 2574.131 kb on - strand at 2574.145 kb on - strand at 2574.160 kb on + strand at 2574.247 kb on - strand at 2574.366 kb on - strand, within BWI76_RS12330 at 2574.386 kb on - strand, within BWI76_RS12330 at 2574.459 kb on + strand, within BWI76_RS12330 at 2574.668 kb on + strand at 2574.668 kb on + strand at 2574.675 kb on - strand at 2574.722 kb on + strand at 2574.827 kb on + strand, within BWI76_RS12335 at 2574.835 kb on - strand, within BWI76_RS12335 at 2574.843 kb on - strand, within BWI76_RS12335 at 2574.862 kb on - strand, within BWI76_RS12335 at 2575.011 kb on - strand at 2575.034 kb on - strand, within BWI76_RS12335 at 2575.034 kb on - strand, within BWI76_RS12335 at 2575.075 kb on - strand, within BWI76_RS12335 at 2575.087 kb on + strand, within BWI76_RS12335 at 2575.087 kb on + strand, within BWI76_RS12335 at 2575.091 kb on + strand, within BWI76_RS12335 at 2575.091 kb on + strand, within BWI76_RS12335 at 2575.095 kb on - strand, within BWI76_RS12335 at 2575.095 kb on - strand, within BWI76_RS12335 at 2575.099 kb on - strand, within BWI76_RS12335 at 2575.099 kb on - strand, within BWI76_RS12335 at 2575.099 kb on - strand, within BWI76_RS12335 at 2575.099 kb on - strand, within BWI76_RS12335 at 2575.115 kb on + strand, within BWI76_RS12335 at 2575.119 kb on - strand, within BWI76_RS12335 at 2575.125 kb on - strand at 2575.179 kb on + strand at 2575.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 2,570,305 - BWI76_RS12315 0.70 -0.6 2,570,404 + BWI76_RS12315 0.89 -0.5 2,570,421 + -0.5 2,570,423 + -0.8 2,570,423 + +0.1 2,570,497 + +0.1 2,570,507 + -1.4 2,570,534 - BWI76_RS12320 0.16 -1.0 2,570,587 + BWI76_RS12320 0.30 +0.7 2,570,592 + BWI76_RS12320 0.32 -0.5 2,570,605 - BWI76_RS12320 0.35 +0.6 2,570,611 + BWI76_RS12320 0.37 -1.0 2,570,624 + BWI76_RS12320 0.40 -0.5 2,570,624 + BWI76_RS12320 0.40 -0.9 2,570,634 + BWI76_RS12320 0.43 -0.8 2,570,647 + BWI76_RS12320 0.46 -0.8 2,570,676 + BWI76_RS12320 0.54 -0.9 2,570,676 + BWI76_RS12320 0.54 +0.2 2,570,680 + -1.3 2,570,697 + BWI76_RS12320 0.60 -2.3 2,570,700 + BWI76_RS12320 0.61 +0.6 2,570,701 + BWI76_RS12320 0.61 -0.2 2,570,707 + BWI76_RS12320 0.62 -1.1 2,570,707 + BWI76_RS12320 0.62 -0.7 2,570,707 + BWI76_RS12320 0.62 -0.2 2,570,707 + BWI76_RS12320 0.62 -1.6 2,570,745 + BWI76_RS12320 0.73 +0.8 2,570,848 + -1.1 2,570,971 + -0.1 2,570,979 - -0.8 2,570,979 - -0.7 2,571,009 + +0.9 2,571,051 - -1.0 2,571,059 - -0.5 2,571,103 + -1.1 2,571,106 - -0.6 2,571,157 - +0.4 2,571,208 + -1.1 2,571,302 + BWI76_RS12325 0.11 -0.6 2,571,310 - BWI76_RS12325 0.11 -1.6 2,571,368 + +0.6 2,571,393 + BWI76_RS12325 0.14 -0.4 2,571,486 + BWI76_RS12325 0.17 -1.1 2,571,486 + BWI76_RS12325 0.17 -1.0 2,571,494 - BWI76_RS12325 0.17 -0.7 2,571,542 + +3.0 2,571,550 - BWI76_RS12325 0.19 -0.4 2,571,550 - BWI76_RS12325 0.19 -1.4 2,571,550 - BWI76_RS12325 0.19 -1.3 2,571,558 + BWI76_RS12325 0.19 -1.5 2,571,560 - BWI76_RS12325 0.19 +0.7 2,571,692 + BWI76_RS12325 0.23 -1.0 2,571,699 + BWI76_RS12325 0.23 -0.6 2,571,699 + BWI76_RS12325 0.23 -0.6 2,571,699 + BWI76_RS12325 0.23 -1.0 2,571,740 - BWI76_RS12325 0.24 -1.0 2,571,773 + BWI76_RS12325 0.25 -0.7 2,571,805 - BWI76_RS12325 0.26 -1.8 2,571,814 + BWI76_RS12325 0.27 -0.3 2,571,814 + BWI76_RS12325 0.27 -1.7 2,571,814 + BWI76_RS12325 0.27 -1.7 2,571,827 - BWI76_RS12325 0.27 -0.5 2,571,922 - BWI76_RS12325 0.30 -1.5 2,571,993 + BWI76_RS12325 0.32 -0.8 2,572,056 + BWI76_RS12325 0.34 -1.3 2,572,204 + BWI76_RS12325 0.38 -2.2 2,572,290 + BWI76_RS12325 0.41 -2.6 2,572,404 + BWI76_RS12325 0.44 +0.0 2,572,433 + BWI76_RS12325 0.45 -1.0 2,572,676 - BWI76_RS12325 0.53 -1.0 2,572,773 + BWI76_RS12325 0.56 -0.8 2,572,793 + BWI76_RS12325 0.56 -0.1 2,572,829 - BWI76_RS12325 0.57 -0.7 2,572,863 + BWI76_RS12325 0.58 -1.7 2,572,863 + BWI76_RS12325 0.58 -0.4 2,573,209 - BWI76_RS12325 0.69 -2.0 2,573,216 + BWI76_RS12325 0.69 -0.9 2,573,221 - BWI76_RS12325 0.69 -0.9 2,573,278 + -0.7 2,573,306 + BWI76_RS12325 0.72 -0.8 2,573,333 - BWI76_RS12325 0.73 -0.7 2,573,367 + BWI76_RS12325 0.74 -0.9 2,573,374 - BWI76_RS12325 0.74 -1.0 2,573,379 - BWI76_RS12325 0.74 -1.4 2,573,384 + BWI76_RS12325 0.74 +0.6 2,573,394 + BWI76_RS12325 0.75 -0.7 2,573,461 - BWI76_RS12325 0.77 -1.7 2,573,496 - BWI76_RS12325 0.78 -1.1 2,573,522 + BWI76_RS12325 0.78 -0.8 2,573,536 - BWI76_RS12325 0.79 -1.2 2,573,630 + BWI76_RS12325 0.82 +0.1 2,573,654 - -0.4 2,573,900 - -0.1 2,574,018 - -1.7 2,574,080 + -0.7 2,574,081 - -0.1 2,574,088 - -0.8 2,574,088 - -0.9 2,574,131 - -0.9 2,574,145 - +0.3 2,574,160 + -0.3 2,574,247 - +0.0 2,574,366 - BWI76_RS12330 0.29 -1.0 2,574,386 - BWI76_RS12330 0.33 -1.4 2,574,459 + BWI76_RS12330 0.49 -1.1 2,574,668 + -0.1 2,574,668 + -1.1 2,574,675 - -0.9 2,574,722 + -0.9 2,574,827 + BWI76_RS12335 0.29 -1.6 2,574,835 - BWI76_RS12335 0.30 -3.7 2,574,843 - BWI76_RS12335 0.32 -1.3 2,574,862 - BWI76_RS12335 0.36 +0.5 2,575,011 - -0.2 2,575,034 - BWI76_RS12335 0.72 -0.5 2,575,034 - BWI76_RS12335 0.72 -2.2 2,575,075 - BWI76_RS12335 0.80 -0.9 2,575,087 + BWI76_RS12335 0.83 -0.4 2,575,087 + BWI76_RS12335 0.83 +0.2 2,575,091 + BWI76_RS12335 0.83 -2.5 2,575,091 + BWI76_RS12335 0.83 -1.0 2,575,095 - BWI76_RS12335 0.84 -0.4 2,575,095 - BWI76_RS12335 0.84 -0.6 2,575,099 - BWI76_RS12335 0.85 -1.5 2,575,099 - BWI76_RS12335 0.85 -1.8 2,575,099 - BWI76_RS12335 0.85 +1.9 2,575,099 - BWI76_RS12335 0.85 -0.1 2,575,115 + BWI76_RS12335 0.88 -0.3 2,575,119 - BWI76_RS12335 0.89 -1.5 2,575,125 - -0.9 2,575,179 + -3.4 2,575,186 - -0.1
Or see this region's nucleotide sequence