Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07975 and BWI76_RS07980 are separated by 195 nucleotides BWI76_RS07980 and BWI76_RS07985 are separated by 58 nucleotides BWI76_RS07985 and BWI76_RS07990 are separated by 91 nucleotides
BWI76_RS07975: BWI76_RS07975 - phospholipid:lipid A palmitoyltransferase, at 1,693,373 to 1,693,942
_RS07975
BWI76_RS07980: BWI76_RS07980 - cold-shock protein, at 1,694,138 to 1,694,347
_RS07980
BWI76_RS07985: BWI76_RS07985 - fluoride ion transporter CrcB, at 1,694,406 to 1,694,789
_RS07985
BWI76_RS07990: BWI76_RS07990 - carbon-nitrogen hydrolase, at 1,694,881 to 1,695,669
_RS07990
Position (kb)
1694
1695 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1693.428 kb on - strand at 1693.554 kb on - strand, within BWI76_RS07975 at 1693.554 kb on - strand, within BWI76_RS07975 at 1693.668 kb on - strand, within BWI76_RS07975 at 1693.703 kb on - strand, within BWI76_RS07975 at 1693.729 kb on + strand, within BWI76_RS07975 at 1693.729 kb on + strand, within BWI76_RS07975 at 1693.886 kb on - strand at 1693.917 kb on - strand at 1694.157 kb on + strand at 1694.674 kb on - strand, within BWI76_RS07985
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 1,693,428 - +0.2 1,693,554 - BWI76_RS07975 0.32 +0.2 1,693,554 - BWI76_RS07975 0.32 -0.1 1,693,668 - BWI76_RS07975 0.52 -0.4 1,693,703 - BWI76_RS07975 0.58 -0.2 1,693,729 + BWI76_RS07975 0.62 -0.2 1,693,729 + BWI76_RS07975 0.62 -0.4 1,693,886 - -0.6 1,693,917 - -1.5 1,694,157 + -3.0 1,694,674 - BWI76_RS07985 0.70 -1.1
Or see this region's nucleotide sequence