Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27185 and BWI76_RS27190 overlap by 4 nucleotides BWI76_RS27190 and BWI76_RS27195 overlap by 1 nucleotides
BWI76_RS27185: BWI76_RS27185 - L-lactate/D-lactate permease <small>(from data)</small>, at 5,642,993 to 5,644,648
_RS27185
BWI76_RS27190: BWI76_RS27190 - transcriptional regulator LldR, at 5,644,645 to 5,645,418
_RS27190
BWI76_RS27195: BWI76_RS27195 - alpha-hydroxy-acid oxidizing enzyme, at 5,645,418 to 5,646,648
_RS27195
Position (kb) 5644
5645
5646 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5643.648 kb on + strand, within BWI76_RS27185 at 5643.656 kb on - strand, within BWI76_RS27185 at 5643.656 kb on - strand, within BWI76_RS27185 at 5643.712 kb on - strand, within BWI76_RS27185 at 5643.722 kb on - strand, within BWI76_RS27185 at 5643.753 kb on - strand, within BWI76_RS27185 at 5643.782 kb on - strand, within BWI76_RS27185 at 5643.787 kb on + strand, within BWI76_RS27185 at 5643.792 kb on - strand, within BWI76_RS27185 at 5643.884 kb on - strand, within BWI76_RS27185 at 5643.890 kb on + strand, within BWI76_RS27185 at 5643.927 kb on + strand, within BWI76_RS27185 at 5643.937 kb on + strand, within BWI76_RS27185 at 5643.940 kb on - strand, within BWI76_RS27185 at 5643.942 kb on - strand, within BWI76_RS27185 at 5643.991 kb on - strand, within BWI76_RS27185 at 5643.991 kb on - strand, within BWI76_RS27185 at 5644.081 kb on + strand, within BWI76_RS27185 at 5644.235 kb on + strand, within BWI76_RS27185 at 5644.235 kb on + strand, within BWI76_RS27185 at 5644.243 kb on - strand, within BWI76_RS27185 at 5644.243 kb on - strand, within BWI76_RS27185 at 5644.243 kb on - strand, within BWI76_RS27185 at 5644.243 kb on - strand, within BWI76_RS27185 at 5644.275 kb on + strand, within BWI76_RS27185 at 5644.498 kb on + strand at 5644.539 kb on - strand at 5644.542 kb on + strand at 5644.625 kb on + strand at 5644.814 kb on + strand, within BWI76_RS27190 at 5644.830 kb on - strand, within BWI76_RS27190 at 5644.890 kb on - strand, within BWI76_RS27190 at 5644.915 kb on - strand, within BWI76_RS27190 at 5644.971 kb on + strand, within BWI76_RS27190 at 5645.121 kb on - strand, within BWI76_RS27190 at 5645.123 kb on + strand, within BWI76_RS27190 at 5645.131 kb on - strand, within BWI76_RS27190 at 5645.131 kb on - strand, within BWI76_RS27190 at 5645.159 kb on + strand, within BWI76_RS27190 at 5645.161 kb on + strand, within BWI76_RS27190 at 5645.246 kb on - strand, within BWI76_RS27190 at 5645.543 kb on + strand, within BWI76_RS27195 at 5645.558 kb on + strand, within BWI76_RS27195 at 5645.871 kb on - strand, within BWI76_RS27195 at 5645.871 kb on - strand, within BWI76_RS27195 at 5645.873 kb on + strand, within BWI76_RS27195 at 5645.873 kb on + strand, within BWI76_RS27195 at 5646.072 kb on + strand, within BWI76_RS27195 at 5646.266 kb on + strand, within BWI76_RS27195 at 5646.406 kb on + strand, within BWI76_RS27195
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 5,643,648 + BWI76_RS27185 0.40 -0.1 5,643,656 - BWI76_RS27185 0.40 +0.1 5,643,656 - BWI76_RS27185 0.40 -1.1 5,643,712 - BWI76_RS27185 0.43 -0.5 5,643,722 - BWI76_RS27185 0.44 -0.8 5,643,753 - BWI76_RS27185 0.46 -0.5 5,643,782 - BWI76_RS27185 0.48 +0.4 5,643,787 + BWI76_RS27185 0.48 +0.6 5,643,792 - BWI76_RS27185 0.48 -0.4 5,643,884 - BWI76_RS27185 0.54 -0.1 5,643,890 + BWI76_RS27185 0.54 -0.5 5,643,927 + BWI76_RS27185 0.56 +0.7 5,643,937 + BWI76_RS27185 0.57 -1.1 5,643,940 - BWI76_RS27185 0.57 -0.6 5,643,942 - BWI76_RS27185 0.57 +0.6 5,643,991 - BWI76_RS27185 0.60 +0.5 5,643,991 - BWI76_RS27185 0.60 -1.7 5,644,081 + BWI76_RS27185 0.66 +1.7 5,644,235 + BWI76_RS27185 0.75 -0.6 5,644,235 + BWI76_RS27185 0.75 -0.5 5,644,243 - BWI76_RS27185 0.75 -0.2 5,644,243 - BWI76_RS27185 0.75 -1.3 5,644,243 - BWI76_RS27185 0.75 -0.1 5,644,243 - BWI76_RS27185 0.75 -0.3 5,644,275 + BWI76_RS27185 0.77 +0.1 5,644,498 + -0.7 5,644,539 - -0.8 5,644,542 + +1.1 5,644,625 + +0.0 5,644,814 + BWI76_RS27190 0.22 +0.0 5,644,830 - BWI76_RS27190 0.24 +0.1 5,644,890 - BWI76_RS27190 0.32 +0.3 5,644,915 - BWI76_RS27190 0.35 +0.4 5,644,971 + BWI76_RS27190 0.42 -0.1 5,645,121 - BWI76_RS27190 0.61 +0.3 5,645,123 + BWI76_RS27190 0.62 -0.2 5,645,131 - BWI76_RS27190 0.63 -0.1 5,645,131 - BWI76_RS27190 0.63 -0.5 5,645,159 + BWI76_RS27190 0.66 -0.7 5,645,161 + BWI76_RS27190 0.67 +0.7 5,645,246 - BWI76_RS27190 0.78 +2.1 5,645,543 + BWI76_RS27195 0.10 -0.1 5,645,558 + BWI76_RS27195 0.11 -2.0 5,645,871 - BWI76_RS27195 0.37 -0.7 5,645,871 - BWI76_RS27195 0.37 -0.4 5,645,873 + BWI76_RS27195 0.37 +0.0 5,645,873 + BWI76_RS27195 0.37 -1.1 5,646,072 + BWI76_RS27195 0.53 -0.9 5,646,266 + BWI76_RS27195 0.69 +1.2 5,646,406 + BWI76_RS27195 0.80 -0.2
Or see this region's nucleotide sequence