Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19845 and BWI76_RS19850 are separated by 77 nucleotides BWI76_RS19850 and BWI76_RS19855 are separated by 178 nucleotides BWI76_RS19855 and BWI76_RS19860 are separated by 59 nucleotides BWI76_RS19860 and BWI76_RS19865 are separated by 338 nucleotides
BWI76_RS19845: BWI76_RS19845 - phosphatase, at 4,149,110 to 4,150,870
_RS19845
BWI76_RS19850: BWI76_RS19850 - tRNA-Pro, at 4,150,948 to 4,151,024
_RS19850
BWI76_RS19855: BWI76_RS19855 - AI-2E family transporter, at 4,151,203 to 4,152,309
_RS19855
BWI76_RS19860: BWI76_RS19860 - hypothetical protein, at 4,152,369 to 4,152,791
_RS19860
BWI76_RS19865: BWI76_RS19865 - ecotin, at 4,153,130 to 4,153,621
_RS19865
Position (kb)
4151
4152
4153 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4150.352 kb on + strand, within BWI76_RS19845 at 4150.429 kb on + strand, within BWI76_RS19845 at 4150.603 kb on + strand, within BWI76_RS19845 at 4150.661 kb on - strand, within BWI76_RS19845 at 4150.717 kb on + strand at 4150.970 kb on - strand, within BWI76_RS19850 at 4150.970 kb on - strand, within BWI76_RS19850 at 4150.977 kb on + strand, within BWI76_RS19850 at 4151.335 kb on - strand, within BWI76_RS19855 at 4151.335 kb on - strand, within BWI76_RS19855 at 4151.447 kb on - strand, within BWI76_RS19855 at 4151.480 kb on + strand, within BWI76_RS19855 at 4151.513 kb on - strand, within BWI76_RS19855 at 4151.622 kb on + strand, within BWI76_RS19855 at 4152.025 kb on - strand, within BWI76_RS19855 at 4152.231 kb on + strand at 4152.239 kb on - strand at 4152.303 kb on + strand at 4152.304 kb on + strand at 4152.325 kb on - strand at 4152.332 kb on + strand at 4152.332 kb on + strand at 4152.332 kb on + strand at 4152.332 kb on + strand at 4152.332 kb on + strand at 4152.332 kb on + strand at 4152.338 kb on - strand at 4152.340 kb on + strand at 4152.340 kb on + strand at 4152.340 kb on - strand at 4152.515 kb on + strand, within BWI76_RS19860 at 4152.559 kb on + strand, within BWI76_RS19860 at 4152.559 kb on + strand, within BWI76_RS19860 at 4152.559 kb on + strand, within BWI76_RS19860 at 4153.005 kb on + strand at 4153.011 kb on - strand at 4153.060 kb on + strand at 4153.062 kb on + strand at 4153.163 kb on - strand at 4153.249 kb on - strand, within BWI76_RS19865
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 4,150,352 + BWI76_RS19845 0.71 -1.4 4,150,429 + BWI76_RS19845 0.75 -1.2 4,150,603 + BWI76_RS19845 0.85 -0.2 4,150,661 - BWI76_RS19845 0.88 -1.3 4,150,717 + -1.7 4,150,970 - BWI76_RS19850 0.29 +0.9 4,150,970 - BWI76_RS19850 0.29 -0.6 4,150,977 + BWI76_RS19850 0.38 -1.2 4,151,335 - BWI76_RS19855 0.12 -0.6 4,151,335 - BWI76_RS19855 0.12 -0.0 4,151,447 - BWI76_RS19855 0.22 -0.2 4,151,480 + BWI76_RS19855 0.25 +0.8 4,151,513 - BWI76_RS19855 0.28 +0.5 4,151,622 + BWI76_RS19855 0.38 -0.0 4,152,025 - BWI76_RS19855 0.74 +1.2 4,152,231 + -0.1 4,152,239 - -0.4 4,152,303 + -0.1 4,152,304 + -0.3 4,152,325 - -0.2 4,152,332 + +0.3 4,152,332 + -2.5 4,152,332 + -0.9 4,152,332 + -0.6 4,152,332 + -0.4 4,152,332 + -0.6 4,152,338 - -0.6 4,152,340 + +1.1 4,152,340 + +0.1 4,152,340 - +1.2 4,152,515 + BWI76_RS19860 0.35 -0.0 4,152,559 + BWI76_RS19860 0.45 -0.2 4,152,559 + BWI76_RS19860 0.45 -0.8 4,152,559 + BWI76_RS19860 0.45 -0.2 4,153,005 + -0.4 4,153,011 - -1.4 4,153,060 + -1.1 4,153,062 + -0.1 4,153,163 - +3.2 4,153,249 - BWI76_RS19865 0.24 -0.3
Or see this region's nucleotide sequence