Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19855

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19845 and BWI76_RS19850 are separated by 77 nucleotidesBWI76_RS19850 and BWI76_RS19855 are separated by 178 nucleotidesBWI76_RS19855 and BWI76_RS19860 are separated by 59 nucleotidesBWI76_RS19860 and BWI76_RS19865 are separated by 338 nucleotides BWI76_RS19845: BWI76_RS19845 - phosphatase, at 4,149,110 to 4,150,870 _RS19845 BWI76_RS19850: BWI76_RS19850 - tRNA-Pro, at 4,150,948 to 4,151,024 _RS19850 BWI76_RS19855: BWI76_RS19855 - AI-2E family transporter, at 4,151,203 to 4,152,309 _RS19855 BWI76_RS19860: BWI76_RS19860 - hypothetical protein, at 4,152,369 to 4,152,791 _RS19860 BWI76_RS19865: BWI76_RS19865 - ecotin, at 4,153,130 to 4,153,621 _RS19865 Position (kb) 4151 4152 4153Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4150.352 kb on + strand, within BWI76_RS19845at 4150.429 kb on + strand, within BWI76_RS19845at 4150.603 kb on + strand, within BWI76_RS19845at 4150.661 kb on - strand, within BWI76_RS19845at 4150.717 kb on + strandat 4150.970 kb on - strand, within BWI76_RS19850at 4150.970 kb on - strand, within BWI76_RS19850at 4150.977 kb on + strand, within BWI76_RS19850at 4151.335 kb on - strand, within BWI76_RS19855at 4151.335 kb on - strand, within BWI76_RS19855at 4151.447 kb on - strand, within BWI76_RS19855at 4151.480 kb on + strand, within BWI76_RS19855at 4151.513 kb on - strand, within BWI76_RS19855at 4151.622 kb on + strand, within BWI76_RS19855at 4152.025 kb on - strand, within BWI76_RS19855at 4152.231 kb on + strandat 4152.239 kb on - strandat 4152.303 kb on + strandat 4152.304 kb on + strandat 4152.325 kb on - strandat 4152.332 kb on + strandat 4152.332 kb on + strandat 4152.332 kb on + strandat 4152.332 kb on + strandat 4152.332 kb on + strandat 4152.332 kb on + strandat 4152.338 kb on - strandat 4152.340 kb on + strandat 4152.340 kb on + strandat 4152.340 kb on - strandat 4152.515 kb on + strand, within BWI76_RS19860at 4152.559 kb on + strand, within BWI76_RS19860at 4152.559 kb on + strand, within BWI76_RS19860at 4152.559 kb on + strand, within BWI76_RS19860at 4153.005 kb on + strandat 4153.011 kb on - strandat 4153.060 kb on + strandat 4153.062 kb on + strandat 4153.163 kb on - strandat 4153.249 kb on - strand, within BWI76_RS19865

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
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4,150,352 + BWI76_RS19845 0.71 -1.4
4,150,429 + BWI76_RS19845 0.75 -1.2
4,150,603 + BWI76_RS19845 0.85 -0.2
4,150,661 - BWI76_RS19845 0.88 -1.3
4,150,717 + -1.7
4,150,970 - BWI76_RS19850 0.29 +0.9
4,150,970 - BWI76_RS19850 0.29 -0.6
4,150,977 + BWI76_RS19850 0.38 -1.2
4,151,335 - BWI76_RS19855 0.12 -0.6
4,151,335 - BWI76_RS19855 0.12 -0.0
4,151,447 - BWI76_RS19855 0.22 -0.2
4,151,480 + BWI76_RS19855 0.25 +0.8
4,151,513 - BWI76_RS19855 0.28 +0.5
4,151,622 + BWI76_RS19855 0.38 -0.0
4,152,025 - BWI76_RS19855 0.74 +1.2
4,152,231 + -0.1
4,152,239 - -0.4
4,152,303 + -0.1
4,152,304 + -0.3
4,152,325 - -0.2
4,152,332 + +0.3
4,152,332 + -2.5
4,152,332 + -0.9
4,152,332 + -0.6
4,152,332 + -0.4
4,152,332 + -0.6
4,152,338 - -0.6
4,152,340 + +1.1
4,152,340 + +0.1
4,152,340 - +1.2
4,152,515 + BWI76_RS19860 0.35 -0.0
4,152,559 + BWI76_RS19860 0.45 -0.2
4,152,559 + BWI76_RS19860 0.45 -0.8
4,152,559 + BWI76_RS19860 0.45 -0.2
4,153,005 + -0.4
4,153,011 - -1.4
4,153,060 + -1.1
4,153,062 + -0.1
4,153,163 - +3.2
4,153,249 - BWI76_RS19865 0.24 -0.3

Or see this region's nucleotide sequence