Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12935 and BWI76_RS12940 are separated by 77 nucleotides BWI76_RS12940 and BWI76_RS12945 are separated by 57 nucleotides BWI76_RS12945 and BWI76_RS12950 are separated by 334 nucleotides
BWI76_RS12935: BWI76_RS12935 - fusaric acid resistance protein, at 2,693,919 to 2,695,958
_RS12935
BWI76_RS12940: BWI76_RS12940 - AraC family transcriptional regulator, at 2,696,036 to 2,696,857
_RS12940
BWI76_RS12945: BWI76_RS12945 - AraC family transcriptional regulator, at 2,696,915 to 2,697,310
_RS12945
BWI76_RS12950: BWI76_RS12950 - acriflavin resistance protein AcrA, at 2,697,645 to 2,698,820
_RS12950
Position (kb)
2696
2697 Strain fitness (log2 ratio)
-1
0
1 at 2695.368 kb on - strand, within BWI76_RS12935 at 2695.368 kb on - strand, within BWI76_RS12935 at 2695.485 kb on + strand, within BWI76_RS12935 at 2695.493 kb on - strand, within BWI76_RS12935 at 2695.854 kb on + strand at 2695.885 kb on + strand at 2695.885 kb on + strand at 2696.060 kb on - strand at 2696.181 kb on + strand, within BWI76_RS12940 at 2696.414 kb on + strand, within BWI76_RS12940 at 2696.777 kb on - strand at 2696.859 kb on - strand at 2696.859 kb on - strand at 2697.835 kb on - strand, within BWI76_RS12950
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 2,695,368 - BWI76_RS12935 0.71 -0.1 2,695,368 - BWI76_RS12935 0.71 -0.1 2,695,485 + BWI76_RS12935 0.77 -0.0 2,695,493 - BWI76_RS12935 0.77 -0.9 2,695,854 + +0.8 2,695,885 + +0.1 2,695,885 + -0.8 2,696,060 - +0.1 2,696,181 + BWI76_RS12940 0.18 -0.4 2,696,414 + BWI76_RS12940 0.46 +0.9 2,696,777 - -0.3 2,696,859 - +0.8 2,696,859 - +0.1 2,697,835 - BWI76_RS12950 0.16 +0.0
Or see this region's nucleotide sequence