Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12490

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12485 and BWI76_RS12490 are separated by 116 nucleotidesBWI76_RS12490 and BWI76_RS12495 are separated by 41 nucleotidesBWI76_RS12495 and BWI76_RS12500 are separated by 101 nucleotides BWI76_RS12485: BWI76_RS12485 - TyrR family transcriptional regulator, at 2,607,363 to 2,608,904 _RS12485 BWI76_RS12490: BWI76_RS12490 - AbrB family transcriptional regulator, at 2,609,021 to 2,610,076 _RS12490 BWI76_RS12495: BWI76_RS12495 - 2-Cys peroxiredoxin, at 2,610,118 to 2,610,627 _RS12495 BWI76_RS12500: BWI76_RS12500 - dipeptide epimerase, at 2,610,729 to 2,611,694 _RS12500 Position (kb) 2609 2610 2611Strain fitness (log2 ratio) -1 0 1at 2608.100 kb on - strand, within BWI76_RS12485at 2608.657 kb on + strand, within BWI76_RS12485at 2608.657 kb on + strand, within BWI76_RS12485at 2608.820 kb on + strandat 2608.855 kb on + strandat 2608.863 kb on - strandat 2608.878 kb on - strandat 2609.419 kb on + strand, within BWI76_RS12490at 2609.567 kb on - strand, within BWI76_RS12490at 2609.661 kb on + strand, within BWI76_RS12490at 2609.745 kb on - strand, within BWI76_RS12490at 2609.988 kb on - strandat 2610.154 kb on + strandat 2610.527 kb on + strand, within BWI76_RS12495at 2611.041 kb on - strand, within BWI76_RS12500at 2611.055 kb on + strand, within BWI76_RS12500

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
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2,608,100 - BWI76_RS12485 0.48 -0.0
2,608,657 + BWI76_RS12485 0.84 -0.1
2,608,657 + BWI76_RS12485 0.84 -1.2
2,608,820 + +0.6
2,608,855 + -0.6
2,608,863 - -0.2
2,608,878 - +0.8
2,609,419 + BWI76_RS12490 0.38 -0.1
2,609,567 - BWI76_RS12490 0.52 +0.4
2,609,661 + BWI76_RS12490 0.61 +0.4
2,609,745 - BWI76_RS12490 0.69 +0.2
2,609,988 - -0.1
2,610,154 + +0.4
2,610,527 + BWI76_RS12495 0.80 -0.1
2,611,041 - BWI76_RS12500 0.32 -0.2
2,611,055 + BWI76_RS12500 0.34 +0.3

Or see this region's nucleotide sequence