Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12485 and BWI76_RS12490 are separated by 116 nucleotides BWI76_RS12490 and BWI76_RS12495 are separated by 41 nucleotides BWI76_RS12495 and BWI76_RS12500 are separated by 101 nucleotides
BWI76_RS12485: BWI76_RS12485 - TyrR family transcriptional regulator, at 2,607,363 to 2,608,904
_RS12485
BWI76_RS12490: BWI76_RS12490 - AbrB family transcriptional regulator, at 2,609,021 to 2,610,076
_RS12490
BWI76_RS12495: BWI76_RS12495 - 2-Cys peroxiredoxin, at 2,610,118 to 2,610,627
_RS12495
BWI76_RS12500: BWI76_RS12500 - dipeptide epimerase, at 2,610,729 to 2,611,694
_RS12500
Position (kb)
2609
2610
2611 Strain fitness (log2 ratio)
-1
0
1 at 2608.100 kb on - strand, within BWI76_RS12485 at 2608.657 kb on + strand, within BWI76_RS12485 at 2608.657 kb on + strand, within BWI76_RS12485 at 2608.820 kb on + strand at 2608.855 kb on + strand at 2608.863 kb on - strand at 2608.878 kb on - strand at 2609.419 kb on + strand, within BWI76_RS12490 at 2609.567 kb on - strand, within BWI76_RS12490 at 2609.661 kb on + strand, within BWI76_RS12490 at 2609.745 kb on - strand, within BWI76_RS12490 at 2609.988 kb on - strand at 2610.154 kb on + strand at 2610.527 kb on + strand, within BWI76_RS12495 at 2611.041 kb on - strand, within BWI76_RS12500 at 2611.055 kb on + strand, within BWI76_RS12500
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 2,608,100 - BWI76_RS12485 0.48 -0.0 2,608,657 + BWI76_RS12485 0.84 -0.1 2,608,657 + BWI76_RS12485 0.84 -1.2 2,608,820 + +0.6 2,608,855 + -0.6 2,608,863 - -0.2 2,608,878 - +0.8 2,609,419 + BWI76_RS12490 0.38 -0.1 2,609,567 - BWI76_RS12490 0.52 +0.4 2,609,661 + BWI76_RS12490 0.61 +0.4 2,609,745 - BWI76_RS12490 0.69 +0.2 2,609,988 - -0.1 2,610,154 + +0.4 2,610,527 + BWI76_RS12495 0.80 -0.1 2,611,041 - BWI76_RS12500 0.32 -0.2 2,611,055 + BWI76_RS12500 0.34 +0.3
Or see this region's nucleotide sequence