Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11175 and BWI76_RS11180 are separated by 225 nucleotides BWI76_RS11180 and BWI76_RS11185 are separated by 56 nucleotides BWI76_RS11185 and BWI76_RS11190 are separated by 353 nucleotides
BWI76_RS11175: BWI76_RS11175 - NADH dehydrogenase, at 2,354,672 to 2,355,976
_RS11175
BWI76_RS11180: BWI76_RS11180 - hypothetical protein, at 2,356,202 to 2,356,741
_RS11180
BWI76_RS11185: BWI76_RS11185 - ligand-gated channel protein, at 2,356,798 to 2,358,975
_RS11185
BWI76_RS11190: BWI76_RS11190 - putative TetR/AcrR family transcriptional regulatory protein, at 2,359,329 to 2,359,964
_RS11190
Position (kb)
2356
2357
2358
2359 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2356.272 kb on + strand, within BWI76_RS11180 at 2356.313 kb on + strand, within BWI76_RS11180 at 2356.561 kb on + strand, within BWI76_RS11180 at 2356.707 kb on + strand at 2356.867 kb on + strand at 2356.880 kb on - strand at 2357.384 kb on - strand, within BWI76_RS11185 at 2357.777 kb on - strand, within BWI76_RS11185 at 2357.913 kb on + strand, within BWI76_RS11185 at 2358.080 kb on - strand, within BWI76_RS11185 at 2358.208 kb on + strand, within BWI76_RS11185 at 2358.678 kb on - strand, within BWI76_RS11185 at 2359.082 kb on + strand at 2359.090 kb on - strand at 2359.095 kb on - strand at 2359.256 kb on - strand at 2359.399 kb on + strand, within BWI76_RS11190 at 2359.895 kb on - strand, within BWI76_RS11190
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 2,356,272 + BWI76_RS11180 0.13 -0.4 2,356,313 + BWI76_RS11180 0.21 +0.2 2,356,561 + BWI76_RS11180 0.66 -0.6 2,356,707 + -0.5 2,356,867 + -0.5 2,356,880 - +0.3 2,357,384 - BWI76_RS11185 0.27 +0.5 2,357,777 - BWI76_RS11185 0.45 +0.1 2,357,913 + BWI76_RS11185 0.51 +0.4 2,358,080 - BWI76_RS11185 0.59 -0.0 2,358,208 + BWI76_RS11185 0.65 +0.1 2,358,678 - BWI76_RS11185 0.86 +1.4 2,359,082 + -0.6 2,359,090 - -3.2 2,359,095 - +0.2 2,359,256 - -0.2 2,359,399 + BWI76_RS11190 0.11 -0.3 2,359,895 - BWI76_RS11190 0.89 -0.3
Or see this region's nucleotide sequence