Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07680 and BWI76_RS07685 overlap by 8 nucleotides BWI76_RS07685 and BWI76_RS07690 are separated by 53 nucleotides BWI76_RS07690 and BWI76_RS07695 are separated by 67 nucleotides
BWI76_RS07680: BWI76_RS07680 - transketolase, at 1,627,339 to 1,628,169
_RS07680
BWI76_RS07685: BWI76_RS07685 - transketolase, at 1,628,162 to 1,629,097
_RS07685
BWI76_RS07690: BWI76_RS07690 - enterochelin synthetase component D, at 1,629,151 to 1,629,774
_RS07690
BWI76_RS07695: BWI76_RS07695 - TonB-dependent siderophore receptor, at 1,629,842 to 1,632,091
_RS07695
Position (kb)
1629
1630 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1628.179 kb on + strand at 1628.630 kb on - strand, within BWI76_RS07685 at 1629.163 kb on + strand at 1629.281 kb on - strand, within BWI76_RS07690 at 1629.496 kb on + strand, within BWI76_RS07690 at 1629.507 kb on + strand, within BWI76_RS07690 at 1629.515 kb on - strand, within BWI76_RS07690 at 1629.542 kb on + strand, within BWI76_RS07690 at 1629.685 kb on - strand, within BWI76_RS07690 at 1630.091 kb on + strand, within BWI76_RS07695 at 1630.099 kb on - strand, within BWI76_RS07695 at 1630.143 kb on + strand, within BWI76_RS07695 at 1630.186 kb on + strand at 1630.189 kb on - strand, within BWI76_RS07695 at 1630.391 kb on + strand, within BWI76_RS07695 at 1630.574 kb on + strand, within BWI76_RS07695 at 1630.574 kb on + strand, within BWI76_RS07695 at 1630.582 kb on - strand, within BWI76_RS07695 at 1630.582 kb on - strand, within BWI76_RS07695 at 1630.611 kb on + strand, within BWI76_RS07695 at 1630.712 kb on - strand, within BWI76_RS07695
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 1,628,179 + -0.2 1,628,630 - BWI76_RS07685 0.50 -1.2 1,629,163 + -0.6 1,629,281 - BWI76_RS07690 0.21 -0.6 1,629,496 + BWI76_RS07690 0.55 +1.8 1,629,507 + BWI76_RS07690 0.57 +0.1 1,629,515 - BWI76_RS07690 0.58 -0.2 1,629,542 + BWI76_RS07690 0.63 +0.3 1,629,685 - BWI76_RS07690 0.86 +0.1 1,630,091 + BWI76_RS07695 0.11 -0.6 1,630,099 - BWI76_RS07695 0.11 -0.0 1,630,143 + BWI76_RS07695 0.13 -0.5 1,630,186 + -1.8 1,630,189 - BWI76_RS07695 0.15 -0.2 1,630,391 + BWI76_RS07695 0.24 -0.1 1,630,574 + BWI76_RS07695 0.33 -0.8 1,630,574 + BWI76_RS07695 0.33 -0.7 1,630,582 - BWI76_RS07695 0.33 -0.9 1,630,582 - BWI76_RS07695 0.33 -0.5 1,630,611 + BWI76_RS07695 0.34 +0.7 1,630,712 - BWI76_RS07695 0.39 -0.8
Or see this region's nucleotide sequence