Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12110 and BWI76_RS12115 overlap by 4 nucleotides BWI76_RS12115 and BWI76_RS12120 overlap by 8 nucleotides BWI76_RS12120 and BWI76_RS12125 are separated by 0 nucleotides BWI76_RS12125 and BWI76_RS12130 overlap by 1 nucleotides BWI76_RS12130 and BWI76_RS12135 overlap by 4 nucleotides
BWI76_RS12110: BWI76_RS12110 - hypothetical protein, at 2,542,145 to 2,542,930
_RS12110
BWI76_RS12115: BWI76_RS12115 - hypothetical protein, at 2,542,927 to 2,543,130
_RS12115
BWI76_RS12120: BWI76_RS12120 - hypothetical protein, at 2,543,123 to 2,543,308
_RS12120
BWI76_RS12125: BWI76_RS12125 - hypothetical protein, at 2,543,309 to 2,543,521
_RS12125
BWI76_RS12130: BWI76_RS12130 - hypothetical protein, at 2,543,521 to 2,543,778
_RS12130
BWI76_RS12135: BWI76_RS12135 - C-5 cytosine-specific DNA methylase, at 2,543,775 to 2,545,757
_RS12135
Position (kb)
2543
2544 Strain fitness (log2 ratio)
-2
-1
0
1 at 2542.613 kb on + strand, within BWI76_RS12110 at 2542.655 kb on - strand, within BWI76_RS12110 at 2542.697 kb on + strand, within BWI76_RS12110 at 2542.866 kb on + strand at 2543.010 kb on - strand, within BWI76_RS12115 at 2543.010 kb on - strand, within BWI76_RS12115 at 2543.015 kb on - strand, within BWI76_RS12115 at 2543.015 kb on - strand, within BWI76_RS12115 at 2543.107 kb on - strand, within BWI76_RS12115 at 2543.108 kb on - strand, within BWI76_RS12115 at 2543.311 kb on + strand at 2543.311 kb on + strand at 2543.311 kb on + strand at 2543.456 kb on + strand, within BWI76_RS12125 at 2543.490 kb on - strand, within BWI76_RS12125 at 2543.913 kb on - strand at 2543.927 kb on + strand at 2544.089 kb on - strand, within BWI76_RS12135 at 2544.253 kb on + strand at 2544.529 kb on + strand, within BWI76_RS12135 at 2544.604 kb on + strand, within BWI76_RS12135 at 2544.614 kb on - strand, within BWI76_RS12135
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 2,542,613 + BWI76_RS12110 0.60 -0.2 2,542,655 - BWI76_RS12110 0.65 -0.5 2,542,697 + BWI76_RS12110 0.70 -1.8 2,542,866 + -0.5 2,543,010 - BWI76_RS12115 0.41 -0.6 2,543,010 - BWI76_RS12115 0.41 -0.9 2,543,015 - BWI76_RS12115 0.43 -0.5 2,543,015 - BWI76_RS12115 0.43 -0.5 2,543,107 - BWI76_RS12115 0.88 -0.5 2,543,108 - BWI76_RS12115 0.89 -1.0 2,543,311 + -0.6 2,543,311 + -1.0 2,543,311 + -1.0 2,543,456 + BWI76_RS12125 0.69 -1.1 2,543,490 - BWI76_RS12125 0.85 -0.9 2,543,913 - -0.5 2,543,927 + -0.3 2,544,089 - BWI76_RS12135 0.16 -1.8 2,544,253 + +1.0 2,544,529 + BWI76_RS12135 0.38 -1.3 2,544,604 + BWI76_RS12135 0.42 -0.6 2,544,614 - BWI76_RS12135 0.42 -0.4
Or see this region's nucleotide sequence