Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03520 and BWI76_RS03525 are separated by 277 nucleotides BWI76_RS03525 and BWI76_RS03530 are separated by 206 nucleotides
BWI76_RS03520: BWI76_RS03520 - diguanylate cyclase, at 729,781 to 731,178
_RS03520
BWI76_RS03525: BWI76_RS03525 - tryptophanyl-tRNA synthetase, at 731,456 to 732,463
_RS03525
BWI76_RS03530: BWI76_RS03530 - tryptophan permease, at 732,670 to 733,926
_RS03530
Position (kb) 731
732
733 Strain fitness (log2 ratio) -2
-1
0
1
2 at 730.531 kb on + strand, within BWI76_RS03520 at 730.535 kb on - strand, within BWI76_RS03520 at 730.536 kb on + strand at 730.542 kb on - strand, within BWI76_RS03520 at 730.544 kb on - strand, within BWI76_RS03520 at 730.544 kb on - strand, within BWI76_RS03520 at 730.545 kb on - strand, within BWI76_RS03520 at 730.555 kb on - strand, within BWI76_RS03520 at 730.594 kb on + strand, within BWI76_RS03520 at 730.602 kb on - strand, within BWI76_RS03520 at 730.614 kb on - strand, within BWI76_RS03520 at 730.624 kb on - strand, within BWI76_RS03520 at 730.638 kb on + strand, within BWI76_RS03520 at 730.638 kb on + strand, within BWI76_RS03520 at 730.642 kb on + strand, within BWI76_RS03520 at 730.642 kb on + strand, within BWI76_RS03520 at 730.642 kb on + strand, within BWI76_RS03520 at 730.646 kb on - strand, within BWI76_RS03520 at 730.648 kb on + strand, within BWI76_RS03520 at 730.648 kb on + strand, within BWI76_RS03520 at 730.650 kb on + strand, within BWI76_RS03520 at 730.650 kb on - strand, within BWI76_RS03520 at 730.656 kb on - strand, within BWI76_RS03520 at 730.666 kb on - strand, within BWI76_RS03520 at 730.699 kb on + strand, within BWI76_RS03520 at 730.723 kb on - strand, within BWI76_RS03520 at 730.757 kb on + strand at 731.147 kb on + strand at 731.223 kb on - strand at 731.247 kb on - strand at 731.326 kb on - strand at 731.381 kb on - strand at 731.447 kb on - strand at 731.454 kb on + strand at 731.462 kb on - strand at 731.548 kb on - strand at 731.614 kb on + strand, within BWI76_RS03525 at 731.709 kb on + strand, within BWI76_RS03525 at 731.745 kb on + strand, within BWI76_RS03525 at 731.920 kb on - strand, within BWI76_RS03525 at 731.929 kb on + strand, within BWI76_RS03525 at 732.106 kb on - strand, within BWI76_RS03525 at 732.437 kb on + strand at 732.532 kb on + strand at 732.532 kb on + strand at 732.579 kb on + strand at 732.690 kb on + strand at 732.690 kb on + strand at 732.698 kb on - strand at 732.798 kb on - strand, within BWI76_RS03530 at 732.822 kb on - strand, within BWI76_RS03530 at 732.839 kb on - strand, within BWI76_RS03530 at 732.901 kb on - strand, within BWI76_RS03530 at 732.949 kb on - strand, within BWI76_RS03530 at 733.002 kb on + strand, within BWI76_RS03530 at 733.067 kb on - strand, within BWI76_RS03530 at 733.087 kb on - strand, within BWI76_RS03530 at 733.099 kb on + strand, within BWI76_RS03530 at 733.208 kb on + strand, within BWI76_RS03530 at 733.339 kb on + strand, within BWI76_RS03530 at 733.339 kb on + strand, within BWI76_RS03530 at 733.359 kb on + strand, within BWI76_RS03530 at 733.404 kb on - strand, within BWI76_RS03530 at 733.444 kb on + strand, within BWI76_RS03530
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 730,531 + BWI76_RS03520 0.54 -0.2 730,535 - BWI76_RS03520 0.54 +0.7 730,536 + +2.6 730,542 - BWI76_RS03520 0.54 +0.0 730,544 - BWI76_RS03520 0.55 +0.3 730,544 - BWI76_RS03520 0.55 +0.0 730,545 - BWI76_RS03520 0.55 -1.2 730,555 - BWI76_RS03520 0.55 -0.4 730,594 + BWI76_RS03520 0.58 +0.4 730,602 - BWI76_RS03520 0.59 -0.1 730,614 - BWI76_RS03520 0.60 +0.4 730,624 - BWI76_RS03520 0.60 +0.5 730,638 + BWI76_RS03520 0.61 +0.2 730,638 + BWI76_RS03520 0.61 +0.1 730,642 + BWI76_RS03520 0.62 -0.1 730,642 + BWI76_RS03520 0.62 -2.5 730,642 + BWI76_RS03520 0.62 -0.4 730,646 - BWI76_RS03520 0.62 +0.0 730,648 + BWI76_RS03520 0.62 +0.3 730,648 + BWI76_RS03520 0.62 -0.1 730,650 + BWI76_RS03520 0.62 -0.7 730,650 - BWI76_RS03520 0.62 +0.8 730,656 - BWI76_RS03520 0.63 +0.3 730,666 - BWI76_RS03520 0.63 -0.5 730,699 + BWI76_RS03520 0.66 -2.4 730,723 - BWI76_RS03520 0.67 +0.3 730,757 + -0.5 731,147 + -0.6 731,223 - +0.5 731,247 - -1.2 731,326 - +0.3 731,381 - +0.1 731,447 - -1.7 731,454 + +0.1 731,462 - -0.2 731,548 - -2.7 731,614 + BWI76_RS03525 0.16 -0.1 731,709 + BWI76_RS03525 0.25 -1.7 731,745 + BWI76_RS03525 0.29 -0.3 731,920 - BWI76_RS03525 0.46 -0.7 731,929 + BWI76_RS03525 0.47 -1.4 732,106 - BWI76_RS03525 0.64 -0.5 732,437 + -2.1 732,532 + -0.1 732,532 + -0.7 732,579 + -0.3 732,690 + -2.7 732,690 + -0.1 732,698 - +0.4 732,798 - BWI76_RS03530 0.10 +0.2 732,822 - BWI76_RS03530 0.12 -0.3 732,839 - BWI76_RS03530 0.13 +0.5 732,901 - BWI76_RS03530 0.18 +0.1 732,949 - BWI76_RS03530 0.22 -2.4 733,002 + BWI76_RS03530 0.26 +0.5 733,067 - BWI76_RS03530 0.32 -0.3 733,087 - BWI76_RS03530 0.33 +1.5 733,099 + BWI76_RS03530 0.34 -0.6 733,208 + BWI76_RS03530 0.43 -1.2 733,339 + BWI76_RS03530 0.53 -2.2 733,339 + BWI76_RS03530 0.53 -0.2 733,359 + BWI76_RS03530 0.55 -0.2 733,404 - BWI76_RS03530 0.58 -0.7 733,444 + BWI76_RS03530 0.62 -0.5
Or see this region's nucleotide sequence