Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11845 and BWI76_RS11850 are separated by 9 nucleotides BWI76_RS11850 and BWI76_RS11855 are separated by 3 nucleotides
BWI76_RS11845: BWI76_RS11845 - tryptophan synthase subunit beta, at 2,489,769 to 2,490,962
_RS11845
BWI76_RS11850: BWI76_RS11850 - bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase, at 2,490,972 to 2,492,330
_RS11850
BWI76_RS11855: BWI76_RS11855 - bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase, at 2,492,334 to 2,493,929
_RS11855
Position (kb)
2490
2491
2492
2493 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2490.020 kb on - strand, within BWI76_RS11845 at 2490.126 kb on + strand, within BWI76_RS11845 at 2490.913 kb on + strand at 2490.932 kb on + strand at 2490.937 kb on + strand at 2490.955 kb on + strand at 2491.046 kb on - strand at 2491.136 kb on + strand, within BWI76_RS11850 at 2491.136 kb on + strand, within BWI76_RS11850 at 2491.324 kb on - strand, within BWI76_RS11850 at 2491.426 kb on - strand, within BWI76_RS11850 at 2491.542 kb on + strand, within BWI76_RS11850 at 2491.601 kb on - strand, within BWI76_RS11850 at 2491.672 kb on - strand, within BWI76_RS11850 at 2491.712 kb on - strand, within BWI76_RS11850 at 2491.732 kb on - strand, within BWI76_RS11850 at 2491.855 kb on + strand, within BWI76_RS11850 at 2492.072 kb on + strand, within BWI76_RS11850 at 2492.072 kb on + strand, within BWI76_RS11850 at 2492.080 kb on - strand, within BWI76_RS11850 at 2492.139 kb on + strand, within BWI76_RS11850 at 2492.341 kb on + strand at 2492.349 kb on - strand at 2492.364 kb on + strand at 2492.372 kb on - strand at 2492.372 kb on - strand at 2492.539 kb on - strand, within BWI76_RS11855 at 2492.739 kb on - strand, within BWI76_RS11855 at 2493.033 kb on + strand, within BWI76_RS11855 at 2493.262 kb on + strand, within BWI76_RS11855
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 2,490,020 - BWI76_RS11845 0.21 -0.7 2,490,126 + BWI76_RS11845 0.30 -6.0 2,490,913 + -3.5 2,490,932 + -3.9 2,490,937 + -3.7 2,490,955 + +0.6 2,491,046 - -3.5 2,491,136 + BWI76_RS11850 0.12 -4.0 2,491,136 + BWI76_RS11850 0.12 -4.0 2,491,324 - BWI76_RS11850 0.26 -3.7 2,491,426 - BWI76_RS11850 0.33 -2.8 2,491,542 + BWI76_RS11850 0.42 -3.8 2,491,601 - BWI76_RS11850 0.46 -3.6 2,491,672 - BWI76_RS11850 0.52 -4.1 2,491,712 - BWI76_RS11850 0.54 -2.3 2,491,732 - BWI76_RS11850 0.56 -3.3 2,491,855 + BWI76_RS11850 0.65 -2.5 2,492,072 + BWI76_RS11850 0.81 -4.9 2,492,072 + BWI76_RS11850 0.81 -2.1 2,492,080 - BWI76_RS11850 0.82 -3.8 2,492,139 + BWI76_RS11850 0.86 -2.7 2,492,341 + -4.5 2,492,349 - -0.1 2,492,364 + +0.9 2,492,372 - -2.7 2,492,372 - -3.1 2,492,539 - BWI76_RS11855 0.13 -4.1 2,492,739 - BWI76_RS11855 0.25 -5.0 2,493,033 + BWI76_RS11855 0.44 -5.2 2,493,262 + BWI76_RS11855 0.58 -6.0
Or see this region's nucleotide sequence