Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04135 and BWI76_RS04140 are separated by 52 nucleotides BWI76_RS04140 and BWI76_RS04145 are separated by 94 nucleotides BWI76_RS04145 and BWI76_RS04150 are separated by 58 nucleotides
BWI76_RS04135: BWI76_RS04135 - thymidine phosphorylase, at 850,425 to 851,747
_RS04135
BWI76_RS04140: BWI76_RS04140 - phosphopentomutase, at 851,800 to 853,023
_RS04140
BWI76_RS04145: BWI76_RS04145 - purine-nucleoside phosphorylase, at 853,118 to 853,840
_RS04145
BWI76_RS04150: BWI76_RS04150 - lipoate--protein ligase A, at 853,899 to 854,915
_RS04150
Position (kb) 851
852
853
854 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 850.836 kb on + strand, within BWI76_RS04135 at 851.062 kb on + strand, within BWI76_RS04135 at 851.062 kb on + strand, within BWI76_RS04135 at 851.077 kb on - strand, within BWI76_RS04135 at 851.136 kb on + strand at 851.331 kb on + strand, within BWI76_RS04135 at 851.339 kb on - strand, within BWI76_RS04135 at 851.339 kb on - strand, within BWI76_RS04135 at 851.661 kb on - strand at 851.663 kb on + strand at 851.752 kb on + strand at 851.755 kb on - strand at 851.760 kb on - strand at 851.896 kb on - strand at 851.972 kb on + strand, within BWI76_RS04140 at 851.980 kb on - strand, within BWI76_RS04140 at 851.990 kb on - strand, within BWI76_RS04140 at 852.095 kb on + strand, within BWI76_RS04140 at 852.195 kb on + strand, within BWI76_RS04140 at 852.378 kb on + strand, within BWI76_RS04140 at 852.585 kb on + strand, within BWI76_RS04140 at 852.856 kb on + strand, within BWI76_RS04140 at 852.866 kb on + strand, within BWI76_RS04140 at 852.948 kb on - strand at 853.171 kb on + strand at 853.670 kb on + strand, within BWI76_RS04145 at 853.696 kb on - strand, within BWI76_RS04145 at 853.751 kb on + strand, within BWI76_RS04145 at 853.789 kb on - strand at 853.815 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 850,836 + BWI76_RS04135 0.31 +0.2 851,062 + BWI76_RS04135 0.48 -2.2 851,062 + BWI76_RS04135 0.48 -0.1 851,077 - BWI76_RS04135 0.49 -1.8 851,136 + +2.5 851,331 + BWI76_RS04135 0.68 +0.0 851,339 - BWI76_RS04135 0.69 -0.1 851,339 - BWI76_RS04135 0.69 -0.2 851,661 - -0.9 851,663 + -0.4 851,752 + -0.2 851,755 - +0.0 851,760 - -1.1 851,896 - -0.9 851,972 + BWI76_RS04140 0.14 -0.9 851,980 - BWI76_RS04140 0.15 +2.8 851,990 - BWI76_RS04140 0.16 -0.3 852,095 + BWI76_RS04140 0.24 +0.2 852,195 + BWI76_RS04140 0.32 +1.2 852,378 + BWI76_RS04140 0.47 -0.4 852,585 + BWI76_RS04140 0.64 -1.4 852,856 + BWI76_RS04140 0.86 +2.1 852,866 + BWI76_RS04140 0.87 +0.4 852,948 - -0.8 853,171 + -0.1 853,670 + BWI76_RS04145 0.76 -0.7 853,696 - BWI76_RS04145 0.80 -1.3 853,751 + BWI76_RS04145 0.88 -1.2 853,789 - -0.3 853,815 + -0.0
Or see this region's nucleotide sequence