Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02990 and BWI76_RS02995 are separated by 12 nucleotides BWI76_RS02995 and BWI76_RS03000 are separated by 36 nucleotides BWI76_RS03000 and BWI76_RS03005 are separated by 192 nucleotides BWI76_RS03005 and BWI76_RS03010 are separated by 190 nucleotides
BWI76_RS02990: BWI76_RS02990 - aspartate carbamoyltransferase regulatory subunit, at 613,512 to 613,973
_RS02990
BWI76_RS02995: BWI76_RS02995 - aspartate carbamoyltransferase, at 613,986 to 614,921
_RS02995
BWI76_RS03000: BWI76_RS03000 - PyrBI operon leader peptide, at 614,958 to 615,062
_RS03000
BWI76_RS03005: BWI76_RS03005 - hypothetical protein, at 615,255 to 615,707
_RS03005
BWI76_RS03010: BWI76_RS03010 - ornithine carbamoyltransferase, at 615,898 to 616,902
_RS03010
Position (kb) 614
615
616 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 614.067 kb on + strand at 614.248 kb on - strand, within BWI76_RS02995 at 614.303 kb on - strand, within BWI76_RS02995 at 614.318 kb on + strand, within BWI76_RS02995 at 614.407 kb on - strand, within BWI76_RS02995 at 614.469 kb on + strand, within BWI76_RS02995 at 614.469 kb on + strand, within BWI76_RS02995 at 614.477 kb on - strand, within BWI76_RS02995 at 614.488 kb on - strand, within BWI76_RS02995 at 614.503 kb on - strand, within BWI76_RS02995 at 614.557 kb on - strand, within BWI76_RS02995 at 614.919 kb on - strand at 615.106 kb on - strand at 615.140 kb on - strand at 615.140 kb on - strand at 615.279 kb on + strand at 615.300 kb on + strand at 615.323 kb on + strand, within BWI76_RS03005 at 615.331 kb on - strand, within BWI76_RS03005 at 615.331 kb on - strand, within BWI76_RS03005 at 615.356 kb on + strand, within BWI76_RS03005 at 615.617 kb on + strand, within BWI76_RS03005 at 615.682 kb on - strand at 615.739 kb on - strand at 615.800 kb on - strand at 615.823 kb on + strand at 615.829 kb on - strand at 615.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 614,067 + -6.0 614,248 - BWI76_RS02995 0.28 -7.1 614,303 - BWI76_RS02995 0.34 -5.3 614,318 + BWI76_RS02995 0.35 -6.1 614,407 - BWI76_RS02995 0.45 -7.6 614,469 + BWI76_RS02995 0.52 -7.0 614,469 + BWI76_RS02995 0.52 -2.9 614,477 - BWI76_RS02995 0.52 -6.2 614,488 - BWI76_RS02995 0.54 -6.9 614,503 - BWI76_RS02995 0.55 -3.6 614,557 - BWI76_RS02995 0.61 -4.0 614,919 - -5.8 615,106 - -0.9 615,140 - -1.3 615,140 - -1.6 615,279 + +0.2 615,300 + -0.2 615,323 + BWI76_RS03005 0.15 -0.2 615,331 - BWI76_RS03005 0.17 +0.0 615,331 - BWI76_RS03005 0.17 -0.2 615,356 + BWI76_RS03005 0.22 -1.7 615,617 + BWI76_RS03005 0.80 -0.0 615,682 - +0.1 615,739 - +0.5 615,800 - -0.6 615,823 + -0.9 615,829 - -0.9 615,858 + -0.5
Or see this region's nucleotide sequence