Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04850

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04845 and BWI76_RS04850 are separated by 194 nucleotidesBWI76_RS04850 and BWI76_RS04855 are separated by 9 nucleotidesBWI76_RS04855 and BWI76_RS04860 are separated by 31 nucleotides BWI76_RS04845: BWI76_RS04845 - nicotinate-nucleotide pyrophosphorylase, at 1,012,016 to 1,012,909 _RS04845 BWI76_RS04850: BWI76_RS04850 - N-acetylmuramoyl-L-alanine amidase, at 1,013,104 to 1,013,655 _RS04850 BWI76_RS04855: BWI76_RS04855 - regulatory protein AmpE, at 1,013,665 to 1,014,519 _RS04855 BWI76_RS04860: BWI76_RS04860 - alpha-N-arabinofuranosidase, at 1,014,551 to 1,015,501 _RS04860 Position (kb) 1013 1014Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1012.194 kb on - strand, within BWI76_RS04845at 1012.418 kb on + strand, within BWI76_RS04845at 1012.426 kb on - strand, within BWI76_RS04845at 1012.802 kb on + strand, within BWI76_RS04845at 1012.802 kb on + strand, within BWI76_RS04845at 1012.810 kb on - strand, within BWI76_RS04845at 1013.094 kb on - strandat 1013.256 kb on + strand, within BWI76_RS04850at 1013.368 kb on + strand, within BWI76_RS04850at 1013.398 kb on + strand, within BWI76_RS04850at 1013.472 kb on + strand, within BWI76_RS04850at 1013.514 kb on - strandat 1013.613 kb on - strandat 1013.675 kb on + strandat 1013.681 kb on - strandat 1013.708 kb on + strandat 1013.716 kb on - strandat 1013.716 kb on - strandat 1013.760 kb on - strand, within BWI76_RS04855at 1013.784 kb on + strand, within BWI76_RS04855at 1013.844 kb on + strand, within BWI76_RS04855at 1013.904 kb on + strand, within BWI76_RS04855at 1013.904 kb on - strand, within BWI76_RS04855at 1013.917 kb on + strandat 1014.080 kb on - strand, within BWI76_RS04855at 1014.278 kb on + strand, within BWI76_RS04855at 1014.395 kb on - strand, within BWI76_RS04855

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,012,194 - BWI76_RS04845 0.20 -6.1
1,012,418 + BWI76_RS04845 0.45 -2.3
1,012,426 - BWI76_RS04845 0.46 -3.1
1,012,802 + BWI76_RS04845 0.88 -3.5
1,012,802 + BWI76_RS04845 0.88 -2.8
1,012,810 - BWI76_RS04845 0.89 -2.9
1,013,094 - -0.5
1,013,256 + BWI76_RS04850 0.28 -0.6
1,013,368 + BWI76_RS04850 0.48 -0.7
1,013,398 + BWI76_RS04850 0.53 +0.6
1,013,472 + BWI76_RS04850 0.67 -0.2
1,013,514 - +0.9
1,013,613 - -1.4
1,013,675 + -0.1
1,013,681 - -0.8
1,013,708 + -0.1
1,013,716 - -0.1
1,013,716 - -0.7
1,013,760 - BWI76_RS04855 0.11 +0.1
1,013,784 + BWI76_RS04855 0.14 +0.3
1,013,844 + BWI76_RS04855 0.21 -1.6
1,013,904 + BWI76_RS04855 0.28 -0.4
1,013,904 - BWI76_RS04855 0.28 -2.5
1,013,917 + +1.0
1,014,080 - BWI76_RS04855 0.49 -0.1
1,014,278 + BWI76_RS04855 0.72 -0.7
1,014,395 - BWI76_RS04855 0.85 -0.5

Or see this region's nucleotide sequence