Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01690 and BWI76_RS01695 are separated by 261 nucleotides BWI76_RS01695 and BWI76_RS01700 are separated by 243 nucleotides
BWI76_RS01690: BWI76_RS01690 - membrane protein, at 347,020 to 348,651
_RS01690
BWI76_RS01695: BWI76_RS01695 - IS110 family transposase, at 348,913 to 349,893
_RS01695
BWI76_RS01700: BWI76_RS01700 - dipeptidase E, at 350,137 to 350,826
_RS01700
Position (kb) 348
349
350 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 347.927 kb on - strand, within BWI76_RS01690 at 347.994 kb on + strand, within BWI76_RS01690 at 347.994 kb on + strand, within BWI76_RS01690 at 348.590 kb on + strand at 348.598 kb on - strand at 348.607 kb on - strand at 348.669 kb on + strand at 348.971 kb on + strand at 349.010 kb on + strand at 349.027 kb on + strand, within BWI76_RS01695 at 349.073 kb on + strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.093 kb on + strand, within BWI76_RS01695 at 349.097 kb on + strand, within BWI76_RS01695 at 349.102 kb on + strand, within BWI76_RS01695 at 349.492 kb on - strand, within BWI76_RS01695 at 349.569 kb on + strand, within BWI76_RS01695 at 349.607 kb on + strand, within BWI76_RS01695 at 349.633 kb on - strand, within BWI76_RS01695 at 349.633 kb on - strand, within BWI76_RS01695 at 349.680 kb on - strand, within BWI76_RS01695 at 349.680 kb on - strand, within BWI76_RS01695 at 349.708 kb on + strand, within BWI76_RS01695 at 349.733 kb on - strand, within BWI76_RS01695 at 349.743 kb on - strand, within BWI76_RS01695 at 349.845 kb on - strand at 349.860 kb on + strand at 350.096 kb on - strand at 350.153 kb on + strand at 350.188 kb on - strand at 350.202 kb on - strand at 350.219 kb on + strand, within BWI76_RS01700 at 350.219 kb on + strand, within BWI76_RS01700 at 350.282 kb on - strand, within BWI76_RS01700 at 350.293 kb on - strand, within BWI76_RS01700 at 350.293 kb on - strand, within BWI76_RS01700 at 350.457 kb on - strand, within BWI76_RS01700 at 350.457 kb on - strand, within BWI76_RS01700 at 350.722 kb on - strand, within BWI76_RS01700 at 350.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 347,927 - BWI76_RS01690 0.56 -1.6 347,994 + BWI76_RS01690 0.60 -0.6 347,994 + BWI76_RS01690 0.60 -0.5 348,590 + -0.9 348,598 - -0.6 348,607 - -1.0 348,669 + +0.4 348,971 + +0.3 349,010 + -0.3 349,027 + BWI76_RS01695 0.12 -0.3 349,073 + BWI76_RS01695 0.16 +0.2 349,081 - BWI76_RS01695 0.17 -0.1 349,081 - BWI76_RS01695 0.17 -1.0 349,081 - BWI76_RS01695 0.17 +0.2 349,081 - BWI76_RS01695 0.17 +0.1 349,093 + BWI76_RS01695 0.18 -0.6 349,097 + BWI76_RS01695 0.19 -0.2 349,102 + BWI76_RS01695 0.19 -0.5 349,492 - BWI76_RS01695 0.59 -1.0 349,569 + BWI76_RS01695 0.67 -0.3 349,607 + BWI76_RS01695 0.71 -0.7 349,633 - BWI76_RS01695 0.73 +0.8 349,633 - BWI76_RS01695 0.73 +0.1 349,680 - BWI76_RS01695 0.78 -0.2 349,680 - BWI76_RS01695 0.78 +0.3 349,708 + BWI76_RS01695 0.81 -1.3 349,733 - BWI76_RS01695 0.84 +0.1 349,743 - BWI76_RS01695 0.85 -0.8 349,845 - -1.1 349,860 + +0.1 350,096 - +1.7 350,153 + -1.4 350,188 - -0.6 350,202 - -0.2 350,219 + BWI76_RS01700 0.12 -0.0 350,219 + BWI76_RS01700 0.12 -1.0 350,282 - BWI76_RS01700 0.21 -4.0 350,293 - BWI76_RS01700 0.23 -0.6 350,293 - BWI76_RS01700 0.23 -1.7 350,457 - BWI76_RS01700 0.46 -0.3 350,457 - BWI76_RS01700 0.46 -0.5 350,722 - BWI76_RS01700 0.85 -2.0 350,780 - -0.3
Or see this region's nucleotide sequence