Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27365 and BWI76_RS27370 are separated by 175 nucleotides BWI76_RS27370 and BWI76_RS27375 overlap by 23 nucleotides BWI76_RS27375 and BWI76_RS27380 are separated by 174 nucleotides
BWI76_RS27365: BWI76_RS27365 - hypothetical protein, at 5,679,015 to 5,679,680
_RS27365
BWI76_RS27370: BWI76_RS27370 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase, at 5,679,856 to 5,681,067
_RS27370
BWI76_RS27375: BWI76_RS27375 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 5,681,045 to 5,681,503
_RS27375
BWI76_RS27380: BWI76_RS27380 - nucleoid occlusion factor SlmA, at 5,681,678 to 5,682,274
_RS27380
Position (kb)
5679
5680
5681
5682 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5679.146 kb on + strand, within BWI76_RS27365 at 5679.146 kb on + strand, within BWI76_RS27365 at 5679.188 kb on - strand, within BWI76_RS27365 at 5679.397 kb on + strand, within BWI76_RS27365 at 5679.447 kb on - strand, within BWI76_RS27365 at 5679.480 kb on - strand, within BWI76_RS27365 at 5679.605 kb on + strand, within BWI76_RS27365 at 5679.711 kb on - strand at 5679.755 kb on + strand at 5679.816 kb on - strand at 5681.619 kb on - strand at 5681.767 kb on + strand, within BWI76_RS27380 at 5681.770 kb on + strand, within BWI76_RS27380
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 5,679,146 + BWI76_RS27365 0.20 +0.3 5,679,146 + BWI76_RS27365 0.20 -2.0 5,679,188 - BWI76_RS27365 0.26 -0.1 5,679,397 + BWI76_RS27365 0.57 -0.7 5,679,447 - BWI76_RS27365 0.65 +1.8 5,679,480 - BWI76_RS27365 0.70 -3.4 5,679,605 + BWI76_RS27365 0.89 +1.3 5,679,711 - +0.2 5,679,755 + +0.1 5,679,816 - +1.1 5,681,619 - -0.5 5,681,767 + BWI76_RS27380 0.15 -1.2 5,681,770 + BWI76_RS27380 0.15 -0.1
Or see this region's nucleotide sequence