Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27185 and BWI76_RS27190 overlap by 4 nucleotides BWI76_RS27190 and BWI76_RS27195 overlap by 1 nucleotides
BWI76_RS27185: BWI76_RS27185 - L-lactate/D-lactate permease <small>(from data)</small>, at 5,642,993 to 5,644,648
_RS27185
BWI76_RS27190: BWI76_RS27190 - transcriptional regulator LldR, at 5,644,645 to 5,645,418
_RS27190
BWI76_RS27195: BWI76_RS27195 - alpha-hydroxy-acid oxidizing enzyme, at 5,645,418 to 5,646,648
_RS27195
Position (kb) 5644
5645
5646 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5643.648 kb on + strand, within BWI76_RS27185 at 5643.656 kb on - strand, within BWI76_RS27185 at 5643.656 kb on - strand, within BWI76_RS27185 at 5643.712 kb on - strand, within BWI76_RS27185 at 5643.722 kb on - strand, within BWI76_RS27185 at 5643.753 kb on - strand, within BWI76_RS27185 at 5643.782 kb on - strand, within BWI76_RS27185 at 5643.787 kb on + strand, within BWI76_RS27185 at 5643.792 kb on - strand, within BWI76_RS27185 at 5643.884 kb on - strand, within BWI76_RS27185 at 5643.890 kb on + strand, within BWI76_RS27185 at 5643.927 kb on + strand, within BWI76_RS27185 at 5643.937 kb on + strand, within BWI76_RS27185 at 5643.940 kb on - strand, within BWI76_RS27185 at 5643.942 kb on - strand, within BWI76_RS27185 at 5643.991 kb on - strand, within BWI76_RS27185 at 5643.991 kb on - strand, within BWI76_RS27185 at 5644.081 kb on + strand, within BWI76_RS27185 at 5644.235 kb on + strand, within BWI76_RS27185 at 5644.235 kb on + strand, within BWI76_RS27185 at 5644.243 kb on - strand, within BWI76_RS27185 at 5644.243 kb on - strand, within BWI76_RS27185 at 5644.243 kb on - strand, within BWI76_RS27185 at 5644.243 kb on - strand, within BWI76_RS27185 at 5644.275 kb on + strand, within BWI76_RS27185 at 5644.498 kb on + strand at 5644.539 kb on - strand at 5644.542 kb on + strand at 5644.625 kb on + strand at 5644.814 kb on + strand, within BWI76_RS27190 at 5644.830 kb on - strand, within BWI76_RS27190 at 5644.890 kb on - strand, within BWI76_RS27190 at 5644.915 kb on - strand, within BWI76_RS27190 at 5644.971 kb on + strand, within BWI76_RS27190 at 5645.121 kb on - strand, within BWI76_RS27190 at 5645.123 kb on + strand, within BWI76_RS27190 at 5645.131 kb on - strand, within BWI76_RS27190 at 5645.131 kb on - strand, within BWI76_RS27190 at 5645.159 kb on + strand, within BWI76_RS27190 at 5645.161 kb on + strand, within BWI76_RS27190 at 5645.246 kb on - strand, within BWI76_RS27190 at 5645.543 kb on + strand, within BWI76_RS27195 at 5645.558 kb on + strand, within BWI76_RS27195 at 5645.871 kb on - strand, within BWI76_RS27195 at 5645.871 kb on - strand, within BWI76_RS27195 at 5645.873 kb on + strand, within BWI76_RS27195 at 5645.873 kb on + strand, within BWI76_RS27195 at 5646.072 kb on + strand, within BWI76_RS27195 at 5646.266 kb on + strand, within BWI76_RS27195 at 5646.406 kb on + strand, within BWI76_RS27195
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 5,643,648 + BWI76_RS27185 0.40 -0.0 5,643,656 - BWI76_RS27185 0.40 -0.8 5,643,656 - BWI76_RS27185 0.40 -3.0 5,643,712 - BWI76_RS27185 0.43 -1.0 5,643,722 - BWI76_RS27185 0.44 +0.2 5,643,753 - BWI76_RS27185 0.46 -1.2 5,643,782 - BWI76_RS27185 0.48 +1.5 5,643,787 + BWI76_RS27185 0.48 +0.8 5,643,792 - BWI76_RS27185 0.48 +0.0 5,643,884 - BWI76_RS27185 0.54 +0.1 5,643,890 + BWI76_RS27185 0.54 -1.7 5,643,927 + BWI76_RS27185 0.56 +0.6 5,643,937 + BWI76_RS27185 0.57 +0.8 5,643,940 - BWI76_RS27185 0.57 -2.1 5,643,942 - BWI76_RS27185 0.57 +0.6 5,643,991 - BWI76_RS27185 0.60 +0.5 5,643,991 - BWI76_RS27185 0.60 -0.3 5,644,081 + BWI76_RS27185 0.66 +3.8 5,644,235 + BWI76_RS27185 0.75 +0.4 5,644,235 + BWI76_RS27185 0.75 +0.3 5,644,243 - BWI76_RS27185 0.75 -1.3 5,644,243 - BWI76_RS27185 0.75 -1.2 5,644,243 - BWI76_RS27185 0.75 -0.5 5,644,243 - BWI76_RS27185 0.75 -0.2 5,644,275 + BWI76_RS27185 0.77 -1.2 5,644,498 + -0.6 5,644,539 - -1.8 5,644,542 + -2.2 5,644,625 + -0.0 5,644,814 + BWI76_RS27190 0.22 -0.3 5,644,830 - BWI76_RS27190 0.24 +2.4 5,644,890 - BWI76_RS27190 0.32 -0.2 5,644,915 - BWI76_RS27190 0.35 -0.2 5,644,971 + BWI76_RS27190 0.42 +0.9 5,645,121 - BWI76_RS27190 0.61 +0.4 5,645,123 + BWI76_RS27190 0.62 +0.4 5,645,131 - BWI76_RS27190 0.63 +0.6 5,645,131 - BWI76_RS27190 0.63 -2.4 5,645,159 + BWI76_RS27190 0.66 +0.3 5,645,161 + BWI76_RS27190 0.67 +0.4 5,645,246 - BWI76_RS27190 0.78 +2.6 5,645,543 + BWI76_RS27195 0.10 +0.3 5,645,558 + BWI76_RS27195 0.11 -0.4 5,645,871 - BWI76_RS27195 0.37 -1.8 5,645,871 - BWI76_RS27195 0.37 -1.9 5,645,873 + BWI76_RS27195 0.37 -0.0 5,645,873 + BWI76_RS27195 0.37 +0.5 5,646,072 + BWI76_RS27195 0.53 -0.7 5,646,266 + BWI76_RS27195 0.69 -1.3 5,646,406 + BWI76_RS27195 0.80 -0.5
Or see this region's nucleotide sequence