Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20000 and BWI76_RS20005 are separated by 96 nucleotides BWI76_RS20005 and BWI76_RS20010 are separated by 269 nucleotides BWI76_RS20010 and BWI76_RS20015 are separated by 49 nucleotides
BWI76_RS20000: BWI76_RS20000 - competence/damage-inducible protein A, at 4,190,166 to 4,191,362
_RS20000
BWI76_RS20005: BWI76_RS20005 - membrane protein, at 4,191,459 to 4,192,001
_RS20005
BWI76_RS20010: BWI76_RS20010 - catalase, at 4,192,271 to 4,193,719
_RS20010
BWI76_RS20015: BWI76_RS20015 - hypothetical protein, at 4,193,769 to 4,194,785
_RS20015
Position (kb) 4192
4193
4194 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4191.665 kb on + strand, within BWI76_RS20005 at 4191.715 kb on + strand, within BWI76_RS20005 at 4191.904 kb on + strand, within BWI76_RS20005 at 4191.926 kb on + strand, within BWI76_RS20005 at 4191.957 kb on + strand at 4192.059 kb on + strand at 4192.099 kb on - strand at 4192.114 kb on - strand at 4192.291 kb on - strand at 4192.335 kb on + strand at 4192.562 kb on - strand, within BWI76_RS20010 at 4192.612 kb on + strand, within BWI76_RS20010 at 4192.612 kb on + strand, within BWI76_RS20010 at 4193.156 kb on - strand at 4193.295 kb on + strand, within BWI76_RS20010 at 4193.531 kb on - strand, within BWI76_RS20010 at 4193.655 kb on - strand at 4193.839 kb on - strand at 4194.512 kb on + strand, within BWI76_RS20015
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 4,191,665 + BWI76_RS20005 0.38 -0.1 4,191,715 + BWI76_RS20005 0.47 -0.0 4,191,904 + BWI76_RS20005 0.82 +0.5 4,191,926 + BWI76_RS20005 0.86 +0.5 4,191,957 + -1.2 4,192,059 + -0.4 4,192,099 - -0.1 4,192,114 - -1.3 4,192,291 - -1.7 4,192,335 + -1.1 4,192,562 - BWI76_RS20010 0.20 -0.0 4,192,612 + BWI76_RS20010 0.24 -2.2 4,192,612 + BWI76_RS20010 0.24 -0.5 4,193,156 - +0.7 4,193,295 + BWI76_RS20010 0.71 -0.8 4,193,531 - BWI76_RS20010 0.87 -0.6 4,193,655 - +1.2 4,193,839 - -2.2 4,194,512 + BWI76_RS20015 0.73 +1.8
Or see this region's nucleotide sequence