Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19175 and BWI76_RS19180 are separated by 234 nucleotides BWI76_RS19180 and BWI76_RS19185 overlap by 20 nucleotides
BWI76_RS19175: BWI76_RS19175 - dicarboxylate/amino acid:cation symporter, at 3,990,445 to 3,991,719
_RS19175
BWI76_RS19180: BWI76_RS19180 - diguanylate cyclase, at 3,991,954 to 3,993,468
_RS19180
BWI76_RS19185: BWI76_RS19185 - ABC transporter ATP-binding protein, at 3,993,449 to 3,994,483
_RS19185
Position (kb)
3991
3992
3993
3994 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3990.978 kb on + strand, within BWI76_RS19175 at 3990.986 kb on - strand, within BWI76_RS19175 at 3991.052 kb on + strand, within BWI76_RS19175 at 3991.254 kb on - strand, within BWI76_RS19175 at 3991.401 kb on + strand, within BWI76_RS19175 at 3991.409 kb on - strand, within BWI76_RS19175 at 3991.420 kb on - strand, within BWI76_RS19175 at 3991.542 kb on - strand, within BWI76_RS19175 at 3991.542 kb on - strand, within BWI76_RS19175 at 3991.642 kb on - strand at 3991.642 kb on - strand at 3991.664 kb on + strand at 3991.668 kb on - strand at 3991.674 kb on - strand at 3991.685 kb on + strand at 3992.030 kb on + strand at 3992.045 kb on + strand at 3992.069 kb on + strand at 3992.099 kb on + strand at 3992.099 kb on + strand at 3992.107 kb on - strand, within BWI76_RS19180 at 3992.107 kb on - strand, within BWI76_RS19180 at 3992.164 kb on - strand, within BWI76_RS19180 at 3992.263 kb on - strand, within BWI76_RS19180 at 3992.263 kb on - strand, within BWI76_RS19180 at 3992.348 kb on + strand, within BWI76_RS19180 at 3992.414 kb on + strand, within BWI76_RS19180 at 3992.459 kb on + strand, within BWI76_RS19180 at 3992.599 kb on + strand, within BWI76_RS19180 at 3992.624 kb on - strand, within BWI76_RS19180 at 3992.758 kb on - strand, within BWI76_RS19180 at 3993.039 kb on + strand, within BWI76_RS19180 at 3993.240 kb on - strand, within BWI76_RS19180 at 3993.296 kb on - strand, within BWI76_RS19180 at 3993.597 kb on + strand, within BWI76_RS19185 at 3993.731 kb on - strand, within BWI76_RS19185 at 3993.743 kb on + strand, within BWI76_RS19185 at 3993.890 kb on + strand, within BWI76_RS19185 at 3993.915 kb on - strand, within BWI76_RS19185 at 3994.031 kb on + strand, within BWI76_RS19185 at 3994.236 kb on + strand, within BWI76_RS19185 at 3994.294 kb on + strand, within BWI76_RS19185 at 3994.373 kb on + strand, within BWI76_RS19185 at 3994.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 3,990,978 + BWI76_RS19175 0.42 -0.1 3,990,986 - BWI76_RS19175 0.42 -0.4 3,991,052 + BWI76_RS19175 0.48 -1.7 3,991,254 - BWI76_RS19175 0.63 +0.2 3,991,401 + BWI76_RS19175 0.75 -2.3 3,991,409 - BWI76_RS19175 0.76 +1.5 3,991,420 - BWI76_RS19175 0.76 -0.2 3,991,542 - BWI76_RS19175 0.86 -0.7 3,991,542 - BWI76_RS19175 0.86 +0.9 3,991,642 - -0.3 3,991,642 - -0.6 3,991,664 + +0.5 3,991,668 - +2.2 3,991,674 - +0.1 3,991,685 + +0.9 3,992,030 + +1.3 3,992,045 + +0.6 3,992,069 + +1.2 3,992,099 + -0.4 3,992,099 + -0.8 3,992,107 - BWI76_RS19180 0.10 -2.9 3,992,107 - BWI76_RS19180 0.10 +0.0 3,992,164 - BWI76_RS19180 0.14 +0.3 3,992,263 - BWI76_RS19180 0.20 -0.8 3,992,263 - BWI76_RS19180 0.20 -0.4 3,992,348 + BWI76_RS19180 0.26 -0.8 3,992,414 + BWI76_RS19180 0.30 +0.8 3,992,459 + BWI76_RS19180 0.33 -0.8 3,992,599 + BWI76_RS19180 0.43 -0.7 3,992,624 - BWI76_RS19180 0.44 -0.9 3,992,758 - BWI76_RS19180 0.53 -0.2 3,993,039 + BWI76_RS19180 0.72 -1.0 3,993,240 - BWI76_RS19180 0.85 -0.4 3,993,296 - BWI76_RS19180 0.89 -1.0 3,993,597 + BWI76_RS19185 0.14 -0.6 3,993,731 - BWI76_RS19185 0.27 -0.3 3,993,743 + BWI76_RS19185 0.28 +0.2 3,993,890 + BWI76_RS19185 0.43 +0.6 3,993,915 - BWI76_RS19185 0.45 +0.2 3,994,031 + BWI76_RS19185 0.56 -1.1 3,994,236 + BWI76_RS19185 0.76 +0.0 3,994,294 + BWI76_RS19185 0.82 -0.2 3,994,373 + BWI76_RS19185 0.89 -0.6 3,994,438 + -1.0
Or see this region's nucleotide sequence