Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17865

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17855 and BWI76_RS17860 are separated by 1 nucleotidesBWI76_RS17860 and BWI76_RS17865 are separated by 90 nucleotidesBWI76_RS17865 and BWI76_RS17870 are separated by 3 nucleotidesBWI76_RS17870 and BWI76_RS17875 are separated by 162 nucleotides BWI76_RS17855: BWI76_RS17855 - alginate lyase, at 3,712,073 to 3,714,103 _RS17855 BWI76_RS17860: BWI76_RS17860 - YoaH family protein, at 3,714,105 to 3,714,284 _RS17860 BWI76_RS17865: BWI76_RS17865 - aminodeoxychorismate synthase subunit I, at 3,714,375 to 3,715,730 _RS17865 BWI76_RS17870: BWI76_RS17870 - coenzyme A pyrophosphatase, at 3,715,734 to 3,716,312 _RS17870 BWI76_RS17875: BWI76_RS17875 - L-serine ammonia-lyase, at 3,716,475 to 3,717,839 _RS17875 Position (kb) 3714 3715 3716Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3713.394 kb on + strand, within BWI76_RS17855at 3713.514 kb on + strand, within BWI76_RS17855at 3713.580 kb on + strand, within BWI76_RS17855at 3713.800 kb on + strand, within BWI76_RS17855at 3714.075 kb on + strandat 3714.094 kb on - strandat 3714.194 kb on - strand, within BWI76_RS17860at 3714.261 kb on - strandat 3714.368 kb on - strandat 3714.368 kb on - strandat 3714.445 kb on + strandat 3714.452 kb on + strandat 3714.618 kb on + strand, within BWI76_RS17865at 3714.642 kb on - strand, within BWI76_RS17865at 3714.906 kb on - strand, within BWI76_RS17865at 3714.927 kb on + strand, within BWI76_RS17865at 3714.965 kb on + strand, within BWI76_RS17865at 3714.974 kb on - strand, within BWI76_RS17865at 3714.975 kb on + strand, within BWI76_RS17865at 3715.131 kb on - strand, within BWI76_RS17865at 3715.175 kb on + strand, within BWI76_RS17865at 3715.221 kb on - strand, within BWI76_RS17865at 3715.221 kb on - strand, within BWI76_RS17865at 3715.391 kb on - strand, within BWI76_RS17865at 3715.940 kb on + strand, within BWI76_RS17870at 3715.964 kb on - strand, within BWI76_RS17870at 3716.079 kb on - strand, within BWI76_RS17870at 3716.091 kb on - strand, within BWI76_RS17870at 3716.219 kb on + strand, within BWI76_RS17870at 3716.236 kb on - strand, within BWI76_RS17870at 3716.320 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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3,713,394 + BWI76_RS17855 0.65 -0.0
3,713,514 + BWI76_RS17855 0.71 -0.2
3,713,580 + BWI76_RS17855 0.74 -2.2
3,713,800 + BWI76_RS17855 0.85 -2.3
3,714,075 + -0.1
3,714,094 - -0.0
3,714,194 - BWI76_RS17860 0.49 -0.2
3,714,261 - +3.1
3,714,368 - -2.4
3,714,368 - -4.5
3,714,445 + -1.3
3,714,452 + -3.9
3,714,618 + BWI76_RS17865 0.18 -1.4
3,714,642 - BWI76_RS17865 0.20 -1.5
3,714,906 - BWI76_RS17865 0.39 -4.8
3,714,927 + BWI76_RS17865 0.41 -2.1
3,714,965 + BWI76_RS17865 0.44 -1.2
3,714,974 - BWI76_RS17865 0.44 -2.0
3,714,975 + BWI76_RS17865 0.44 -1.7
3,715,131 - BWI76_RS17865 0.56 -1.9
3,715,175 + BWI76_RS17865 0.59 -0.7
3,715,221 - BWI76_RS17865 0.62 -0.7
3,715,221 - BWI76_RS17865 0.62 -1.2
3,715,391 - BWI76_RS17865 0.75 -1.2
3,715,940 + BWI76_RS17870 0.36 -1.8
3,715,964 - BWI76_RS17870 0.40 +2.1
3,716,079 - BWI76_RS17870 0.60 -0.7
3,716,091 - BWI76_RS17870 0.62 -0.2
3,716,219 + BWI76_RS17870 0.84 +0.4
3,716,236 - BWI76_RS17870 0.87 +0.4
3,716,320 - -0.2

Or see this region's nucleotide sequence