Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17855 and BWI76_RS17860 are separated by 1 nucleotides BWI76_RS17860 and BWI76_RS17865 are separated by 90 nucleotides BWI76_RS17865 and BWI76_RS17870 are separated by 3 nucleotides BWI76_RS17870 and BWI76_RS17875 are separated by 162 nucleotides
BWI76_RS17855: BWI76_RS17855 - alginate lyase, at 3,712,073 to 3,714,103
_RS17855
BWI76_RS17860: BWI76_RS17860 - YoaH family protein, at 3,714,105 to 3,714,284
_RS17860
BWI76_RS17865: BWI76_RS17865 - aminodeoxychorismate synthase subunit I, at 3,714,375 to 3,715,730
_RS17865
BWI76_RS17870: BWI76_RS17870 - coenzyme A pyrophosphatase, at 3,715,734 to 3,716,312
_RS17870
BWI76_RS17875: BWI76_RS17875 - L-serine ammonia-lyase, at 3,716,475 to 3,717,839
_RS17875
Position (kb)
3714
3715
3716 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 3713.394 kb on + strand, within BWI76_RS17855 at 3713.514 kb on + strand, within BWI76_RS17855 at 3713.580 kb on + strand, within BWI76_RS17855 at 3713.800 kb on + strand, within BWI76_RS17855 at 3714.075 kb on + strand at 3714.094 kb on - strand at 3714.194 kb on - strand, within BWI76_RS17860 at 3714.261 kb on - strand at 3714.368 kb on - strand at 3714.368 kb on - strand at 3714.445 kb on + strand at 3714.452 kb on + strand at 3714.618 kb on + strand, within BWI76_RS17865 at 3714.642 kb on - strand, within BWI76_RS17865 at 3714.906 kb on - strand, within BWI76_RS17865 at 3714.927 kb on + strand, within BWI76_RS17865 at 3714.965 kb on + strand, within BWI76_RS17865 at 3714.974 kb on - strand, within BWI76_RS17865 at 3714.975 kb on + strand, within BWI76_RS17865 at 3715.131 kb on - strand, within BWI76_RS17865 at 3715.175 kb on + strand, within BWI76_RS17865 at 3715.221 kb on - strand, within BWI76_RS17865 at 3715.221 kb on - strand, within BWI76_RS17865 at 3715.391 kb on - strand, within BWI76_RS17865 at 3715.940 kb on + strand, within BWI76_RS17870 at 3715.964 kb on - strand, within BWI76_RS17870 at 3716.079 kb on - strand, within BWI76_RS17870 at 3716.091 kb on - strand, within BWI76_RS17870 at 3716.219 kb on + strand, within BWI76_RS17870 at 3716.236 kb on - strand, within BWI76_RS17870 at 3716.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 3,713,394 + BWI76_RS17855 0.65 -0.0 3,713,514 + BWI76_RS17855 0.71 -0.2 3,713,580 + BWI76_RS17855 0.74 -2.2 3,713,800 + BWI76_RS17855 0.85 -2.3 3,714,075 + -0.1 3,714,094 - -0.0 3,714,194 - BWI76_RS17860 0.49 -0.2 3,714,261 - +3.1 3,714,368 - -2.4 3,714,368 - -4.5 3,714,445 + -1.3 3,714,452 + -3.9 3,714,618 + BWI76_RS17865 0.18 -1.4 3,714,642 - BWI76_RS17865 0.20 -1.5 3,714,906 - BWI76_RS17865 0.39 -4.8 3,714,927 + BWI76_RS17865 0.41 -2.1 3,714,965 + BWI76_RS17865 0.44 -1.2 3,714,974 - BWI76_RS17865 0.44 -2.0 3,714,975 + BWI76_RS17865 0.44 -1.7 3,715,131 - BWI76_RS17865 0.56 -1.9 3,715,175 + BWI76_RS17865 0.59 -0.7 3,715,221 - BWI76_RS17865 0.62 -0.7 3,715,221 - BWI76_RS17865 0.62 -1.2 3,715,391 - BWI76_RS17865 0.75 -1.2 3,715,940 + BWI76_RS17870 0.36 -1.8 3,715,964 - BWI76_RS17870 0.40 +2.1 3,716,079 - BWI76_RS17870 0.60 -0.7 3,716,091 - BWI76_RS17870 0.62 -0.2 3,716,219 + BWI76_RS17870 0.84 +0.4 3,716,236 - BWI76_RS17870 0.87 +0.4 3,716,320 - -0.2
Or see this region's nucleotide sequence