Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13480

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13470 and BWI76_RS13475 overlap by 4 nucleotidesBWI76_RS13475 and BWI76_RS13480 are separated by 276 nucleotidesBWI76_RS13480 and BWI76_RS13485 are separated by 65 nucleotides BWI76_RS13470: BWI76_RS13470 - transporter, at 2,809,041 to 2,809,490 _RS13470 BWI76_RS13475: BWI76_RS13475 - N-acetyltransferase, at 2,809,487 to 2,810,005 _RS13475 BWI76_RS13480: BWI76_RS13480 - XRE family transcriptional regulator, at 2,810,282 to 2,810,857 _RS13480 BWI76_RS13485: BWI76_RS13485 - NADP-dependent oxidoreductase, at 2,810,923 to 2,811,960 _RS13485 Position (kb) 2810 2811Strain fitness (log2 ratio) -3 -2 -1 0 1at 2809.585 kb on + strandat 2809.723 kb on - strand, within BWI76_RS13475at 2810.105 kb on + strandat 2810.768 kb on - strand, within BWI76_RS13480at 2811.278 kb on + strand, within BWI76_RS13485at 2811.343 kb on - strand, within BWI76_RS13485at 2811.413 kb on - strand, within BWI76_RS13485at 2811.521 kb on - strand, within BWI76_RS13485

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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2,809,585 + -1.2
2,809,723 - BWI76_RS13475 0.45 -1.9
2,810,105 + -0.2
2,810,768 - BWI76_RS13480 0.84 -2.5
2,811,278 + BWI76_RS13485 0.34 +0.7
2,811,343 - BWI76_RS13485 0.40 -0.0
2,811,413 - BWI76_RS13485 0.47 -0.5
2,811,521 - BWI76_RS13485 0.58 -3.4

Or see this region's nucleotide sequence