Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10660 and BWI76_RS10665 are separated by 51 nucleotides BWI76_RS10665 and BWI76_RS10670 are separated by 20 nucleotides BWI76_RS10670 and BWI76_RS10675 are separated by 308 nucleotides
BWI76_RS10660: BWI76_RS10660 - formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme, at 2,250,063 to 2,252,360
_RS10660
BWI76_RS10665: BWI76_RS10665 - PTS system fructose-like transporter subunit EIIB, at 2,252,412 to 2,252,732
_RS10665
BWI76_RS10670: BWI76_RS10670 - PTS fructose transporter subunit IIC, at 2,252,753 to 2,253,829
_RS10670
BWI76_RS10675: BWI76_RS10675 - phosphoenolpyruvate--protein phosphotransferase, at 2,254,138 to 2,256,639
_RS10675
Position (kb)
2252
2253
2254 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2251.766 kb on - strand, within BWI76_RS10660 at 2251.904 kb on - strand, within BWI76_RS10660 at 2251.904 kb on - strand, within BWI76_RS10660 at 2251.948 kb on + strand, within BWI76_RS10660 at 2252.107 kb on + strand, within BWI76_RS10660 at 2252.677 kb on + strand, within BWI76_RS10665 at 2252.682 kb on + strand, within BWI76_RS10665 at 2252.685 kb on - strand, within BWI76_RS10665 at 2252.790 kb on + strand at 2252.823 kb on + strand at 2252.841 kb on - strand at 2252.934 kb on + strand, within BWI76_RS10670 at 2252.934 kb on + strand, within BWI76_RS10670 at 2252.980 kb on - strand, within BWI76_RS10670 at 2253.276 kb on + strand, within BWI76_RS10670 at 2253.676 kb on + strand, within BWI76_RS10670 at 2253.783 kb on - strand at 2254.178 kb on + strand at 2254.365 kb on - strand at 2254.570 kb on - strand, within BWI76_RS10675 at 2254.815 kb on - strand, within BWI76_RS10675
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 2,251,766 - BWI76_RS10660 0.74 +0.4 2,251,904 - BWI76_RS10660 0.80 -1.2 2,251,904 - BWI76_RS10660 0.80 -0.1 2,251,948 + BWI76_RS10660 0.82 +1.9 2,252,107 + BWI76_RS10660 0.89 -0.4 2,252,677 + BWI76_RS10665 0.83 +0.4 2,252,682 + BWI76_RS10665 0.84 +0.2 2,252,685 - BWI76_RS10665 0.85 +0.1 2,252,790 + +0.7 2,252,823 + -0.7 2,252,841 - -0.4 2,252,934 + BWI76_RS10670 0.17 -0.9 2,252,934 + BWI76_RS10670 0.17 -2.6 2,252,980 - BWI76_RS10670 0.21 -1.6 2,253,276 + BWI76_RS10670 0.49 -0.5 2,253,676 + BWI76_RS10670 0.86 -0.2 2,253,783 - -0.3 2,254,178 + +0.5 2,254,365 - +0.1 2,254,570 - BWI76_RS10675 0.17 -0.5 2,254,815 - BWI76_RS10675 0.27 +0.3
Or see this region's nucleotide sequence