Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09895 and BWI76_RS09900 overlap by 4 nucleotides BWI76_RS09900 and BWI76_RS09905 are separated by 56 nucleotides BWI76_RS09905 and BWI76_RS09910 are separated by 248 nucleotides
BWI76_RS09895: BWI76_RS09895 - aliphatic sulfonates ABC transporter ATP-binding protein, at 2,081,787 to 2,082,560
_RS09895
BWI76_RS09900: BWI76_RS09900 - alkanesulfonate transporter permease subunit, at 2,082,557 to 2,083,348
_RS09900
BWI76_RS09905: BWI76_RS09905 - FMN reductase (NADPH), at 2,083,405 to 2,083,980
_RS09905
BWI76_RS09910: BWI76_RS09910 - dihydroorotate dehydrogenase (quinone), at 2,084,229 to 2,085,239
_RS09910
Position (kb)
2083
2084 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 2082.522 kb on - strand at 2082.679 kb on + strand, within BWI76_RS09900 at 2082.746 kb on + strand, within BWI76_RS09900 at 2082.824 kb on + strand, within BWI76_RS09900 at 2082.824 kb on + strand, within BWI76_RS09900 at 2083.022 kb on + strand, within BWI76_RS09900 at 2083.086 kb on + strand, within BWI76_RS09900 at 2083.155 kb on - strand, within BWI76_RS09900 at 2083.381 kb on + strand at 2083.462 kb on + strand at 2083.470 kb on - strand, within BWI76_RS09905 at 2083.614 kb on + strand, within BWI76_RS09905 at 2083.622 kb on + strand, within BWI76_RS09905 at 2083.711 kb on + strand, within BWI76_RS09905 at 2083.830 kb on - strand, within BWI76_RS09905 at 2083.951 kb on - strand at 2083.951 kb on - strand at 2084.097 kb on + strand at 2084.344 kb on + strand, within BWI76_RS09910 at 2084.382 kb on - strand, within BWI76_RS09910 at 2084.398 kb on + strand, within BWI76_RS09910 at 2084.445 kb on - strand, within BWI76_RS09910 at 2084.504 kb on + strand, within BWI76_RS09910 at 2084.518 kb on + strand, within BWI76_RS09910 at 2084.527 kb on + strand, within BWI76_RS09910 at 2084.527 kb on + strand, within BWI76_RS09910 at 2084.550 kb on - strand, within BWI76_RS09910 at 2084.579 kb on + strand, within BWI76_RS09910 at 2084.579 kb on + strand, within BWI76_RS09910 at 2084.579 kb on + strand, within BWI76_RS09910 at 2084.586 kb on + strand, within BWI76_RS09910 at 2084.586 kb on + strand, within BWI76_RS09910 at 2084.592 kb on - strand, within BWI76_RS09910 at 2084.594 kb on - strand, within BWI76_RS09910 at 2084.597 kb on - strand, within BWI76_RS09910 at 2084.615 kb on + strand, within BWI76_RS09910 at 2084.654 kb on + strand, within BWI76_RS09910 at 2084.662 kb on - strand, within BWI76_RS09910 at 2084.662 kb on - strand, within BWI76_RS09910 at 2084.686 kb on - strand, within BWI76_RS09910 at 2084.760 kb on + strand, within BWI76_RS09910 at 2084.761 kb on + strand, within BWI76_RS09910 at 2084.761 kb on + strand, within BWI76_RS09910 at 2084.761 kb on + strand, within BWI76_RS09910 at 2084.761 kb on + strand, within BWI76_RS09910 at 2084.761 kb on + strand, within BWI76_RS09910 at 2084.761 kb on + strand, within BWI76_RS09910 at 2084.761 kb on + strand, within BWI76_RS09910 at 2084.761 kb on + strand, within BWI76_RS09910 at 2084.761 kb on + strand, within BWI76_RS09910 at 2084.761 kb on + strand, within BWI76_RS09910 at 2084.761 kb on + strand, within BWI76_RS09910 at 2084.761 kb on + strand, within BWI76_RS09910 at 2084.761 kb on + strand, within BWI76_RS09910 at 2084.761 kb on + strand, within BWI76_RS09910 at 2084.768 kb on - strand, within BWI76_RS09910 at 2084.769 kb on - strand, within BWI76_RS09910 at 2084.769 kb on - strand, within BWI76_RS09910 at 2084.769 kb on - strand, within BWI76_RS09910 at 2084.769 kb on - strand, within BWI76_RS09910 at 2084.769 kb on - strand, within BWI76_RS09910 at 2084.769 kb on - strand, within BWI76_RS09910 at 2084.769 kb on - strand, within BWI76_RS09910 at 2084.769 kb on - strand, within BWI76_RS09910 at 2084.769 kb on - strand, within BWI76_RS09910 at 2084.769 kb on - strand, within BWI76_RS09910 at 2084.769 kb on - strand, within BWI76_RS09910 at 2084.769 kb on - strand, within BWI76_RS09910 at 2084.769 kb on - strand, within BWI76_RS09910 at 2084.769 kb on - strand, within BWI76_RS09910 at 2084.884 kb on + strand, within BWI76_RS09910 at 2084.892 kb on - strand, within BWI76_RS09910 at 2084.909 kb on + strand, within BWI76_RS09910 at 2084.926 kb on + strand, within BWI76_RS09910 at 2084.934 kb on - strand, within BWI76_RS09910 at 2084.978 kb on - strand, within BWI76_RS09910
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 2,082,522 - +0.1 2,082,679 + BWI76_RS09900 0.15 -0.3 2,082,746 + BWI76_RS09900 0.24 +2.0 2,082,824 + BWI76_RS09900 0.34 +0.1 2,082,824 + BWI76_RS09900 0.34 +1.1 2,083,022 + BWI76_RS09900 0.59 -2.0 2,083,086 + BWI76_RS09900 0.67 -1.1 2,083,155 - BWI76_RS09900 0.76 +1.5 2,083,381 + +0.3 2,083,462 + -2.0 2,083,470 - BWI76_RS09905 0.11 +0.5 2,083,614 + BWI76_RS09905 0.36 +0.8 2,083,622 + BWI76_RS09905 0.38 +0.9 2,083,711 + BWI76_RS09905 0.53 +0.8 2,083,830 - BWI76_RS09905 0.74 +0.2 2,083,951 - +0.4 2,083,951 - -0.6 2,084,097 + -0.6 2,084,344 + BWI76_RS09910 0.11 -6.1 2,084,382 - BWI76_RS09910 0.15 -4.1 2,084,398 + BWI76_RS09910 0.17 -3.4 2,084,445 - BWI76_RS09910 0.21 -1.0 2,084,504 + BWI76_RS09910 0.27 -2.7 2,084,518 + BWI76_RS09910 0.29 -3.0 2,084,527 + BWI76_RS09910 0.29 -5.5 2,084,527 + BWI76_RS09910 0.29 -1.7 2,084,550 - BWI76_RS09910 0.32 -5.4 2,084,579 + BWI76_RS09910 0.35 -4.8 2,084,579 + BWI76_RS09910 0.35 -4.7 2,084,579 + BWI76_RS09910 0.35 -5.4 2,084,586 + BWI76_RS09910 0.35 -5.3 2,084,586 + BWI76_RS09910 0.35 -5.9 2,084,592 - BWI76_RS09910 0.36 -2.5 2,084,594 - BWI76_RS09910 0.36 -2.8 2,084,597 - BWI76_RS09910 0.36 -3.9 2,084,615 + BWI76_RS09910 0.38 -5.8 2,084,654 + BWI76_RS09910 0.42 -6.5 2,084,662 - BWI76_RS09910 0.43 -4.0 2,084,662 - BWI76_RS09910 0.43 -2.2 2,084,686 - BWI76_RS09910 0.45 -3.1 2,084,760 + BWI76_RS09910 0.53 -4.8 2,084,761 + BWI76_RS09910 0.53 -3.0 2,084,761 + BWI76_RS09910 0.53 -6.0 2,084,761 + BWI76_RS09910 0.53 -2.4 2,084,761 + BWI76_RS09910 0.53 -4.4 2,084,761 + BWI76_RS09910 0.53 -5.6 2,084,761 + BWI76_RS09910 0.53 -5.1 2,084,761 + BWI76_RS09910 0.53 -5.7 2,084,761 + BWI76_RS09910 0.53 -4.4 2,084,761 + BWI76_RS09910 0.53 -4.9 2,084,761 + BWI76_RS09910 0.53 -5.2 2,084,761 + BWI76_RS09910 0.53 -2.8 2,084,761 + BWI76_RS09910 0.53 -3.0 2,084,761 + BWI76_RS09910 0.53 -5.3 2,084,761 + BWI76_RS09910 0.53 -5.3 2,084,768 - BWI76_RS09910 0.53 -4.1 2,084,769 - BWI76_RS09910 0.53 -1.5 2,084,769 - BWI76_RS09910 0.53 -3.2 2,084,769 - BWI76_RS09910 0.53 -3.2 2,084,769 - BWI76_RS09910 0.53 -4.2 2,084,769 - BWI76_RS09910 0.53 -1.9 2,084,769 - BWI76_RS09910 0.53 -3.5 2,084,769 - BWI76_RS09910 0.53 -5.2 2,084,769 - BWI76_RS09910 0.53 -0.1 2,084,769 - BWI76_RS09910 0.53 -4.0 2,084,769 - BWI76_RS09910 0.53 -3.5 2,084,769 - BWI76_RS09910 0.53 -2.3 2,084,769 - BWI76_RS09910 0.53 -4.6 2,084,769 - BWI76_RS09910 0.53 -5.2 2,084,769 - BWI76_RS09910 0.53 -2.1 2,084,884 + BWI76_RS09910 0.65 -4.1 2,084,892 - BWI76_RS09910 0.66 -1.0 2,084,909 + BWI76_RS09910 0.67 -4.2 2,084,926 + BWI76_RS09910 0.69 -4.7 2,084,934 - BWI76_RS09910 0.70 -4.5 2,084,978 - BWI76_RS09910 0.74 -5.0
Or see this region's nucleotide sequence