Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09905

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09895 and BWI76_RS09900 overlap by 4 nucleotidesBWI76_RS09900 and BWI76_RS09905 are separated by 56 nucleotidesBWI76_RS09905 and BWI76_RS09910 are separated by 248 nucleotides BWI76_RS09895: BWI76_RS09895 - aliphatic sulfonates ABC transporter ATP-binding protein, at 2,081,787 to 2,082,560 _RS09895 BWI76_RS09900: BWI76_RS09900 - alkanesulfonate transporter permease subunit, at 2,082,557 to 2,083,348 _RS09900 BWI76_RS09905: BWI76_RS09905 - FMN reductase (NADPH), at 2,083,405 to 2,083,980 _RS09905 BWI76_RS09910: BWI76_RS09910 - dihydroorotate dehydrogenase (quinone), at 2,084,229 to 2,085,239 _RS09910 Position (kb) 2083 2084Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 2082.522 kb on - strandat 2082.679 kb on + strand, within BWI76_RS09900at 2082.746 kb on + strand, within BWI76_RS09900at 2082.824 kb on + strand, within BWI76_RS09900at 2082.824 kb on + strand, within BWI76_RS09900at 2083.022 kb on + strand, within BWI76_RS09900at 2083.086 kb on + strand, within BWI76_RS09900at 2083.155 kb on - strand, within BWI76_RS09900at 2083.381 kb on + strandat 2083.462 kb on + strandat 2083.470 kb on - strand, within BWI76_RS09905at 2083.614 kb on + strand, within BWI76_RS09905at 2083.622 kb on + strand, within BWI76_RS09905at 2083.711 kb on + strand, within BWI76_RS09905at 2083.830 kb on - strand, within BWI76_RS09905at 2083.951 kb on - strandat 2083.951 kb on - strandat 2084.097 kb on + strandat 2084.344 kb on + strand, within BWI76_RS09910at 2084.382 kb on - strand, within BWI76_RS09910at 2084.398 kb on + strand, within BWI76_RS09910at 2084.445 kb on - strand, within BWI76_RS09910at 2084.504 kb on + strand, within BWI76_RS09910at 2084.518 kb on + strand, within BWI76_RS09910at 2084.527 kb on + strand, within BWI76_RS09910at 2084.527 kb on + strand, within BWI76_RS09910at 2084.550 kb on - strand, within BWI76_RS09910at 2084.579 kb on + strand, within BWI76_RS09910at 2084.579 kb on + strand, within BWI76_RS09910at 2084.579 kb on + strand, within BWI76_RS09910at 2084.586 kb on + strand, within BWI76_RS09910at 2084.586 kb on + strand, within BWI76_RS09910at 2084.592 kb on - strand, within BWI76_RS09910at 2084.594 kb on - strand, within BWI76_RS09910at 2084.597 kb on - strand, within BWI76_RS09910at 2084.615 kb on + strand, within BWI76_RS09910at 2084.654 kb on + strand, within BWI76_RS09910at 2084.662 kb on - strand, within BWI76_RS09910at 2084.662 kb on - strand, within BWI76_RS09910at 2084.686 kb on - strand, within BWI76_RS09910at 2084.760 kb on + strand, within BWI76_RS09910at 2084.761 kb on + strand, within BWI76_RS09910at 2084.761 kb on + strand, within BWI76_RS09910at 2084.761 kb on + strand, within BWI76_RS09910at 2084.761 kb on + strand, within BWI76_RS09910at 2084.761 kb on + strand, within BWI76_RS09910at 2084.761 kb on + strand, within BWI76_RS09910at 2084.761 kb on + strand, within BWI76_RS09910at 2084.761 kb on + strand, within BWI76_RS09910at 2084.761 kb on + strand, within BWI76_RS09910at 2084.761 kb on + strand, within BWI76_RS09910at 2084.761 kb on + strand, within BWI76_RS09910at 2084.761 kb on + strand, within BWI76_RS09910at 2084.761 kb on + strand, within BWI76_RS09910at 2084.761 kb on + strand, within BWI76_RS09910at 2084.768 kb on - strand, within BWI76_RS09910at 2084.769 kb on - strand, within BWI76_RS09910at 2084.769 kb on - strand, within BWI76_RS09910at 2084.769 kb on - strand, within BWI76_RS09910at 2084.769 kb on - strand, within BWI76_RS09910at 2084.769 kb on - strand, within BWI76_RS09910at 2084.769 kb on - strand, within BWI76_RS09910at 2084.769 kb on - strand, within BWI76_RS09910at 2084.769 kb on - strand, within BWI76_RS09910at 2084.769 kb on - strand, within BWI76_RS09910at 2084.769 kb on - strand, within BWI76_RS09910at 2084.769 kb on - strand, within BWI76_RS09910at 2084.769 kb on - strand, within BWI76_RS09910at 2084.769 kb on - strand, within BWI76_RS09910at 2084.769 kb on - strand, within BWI76_RS09910at 2084.884 kb on + strand, within BWI76_RS09910at 2084.892 kb on - strand, within BWI76_RS09910at 2084.909 kb on + strand, within BWI76_RS09910at 2084.926 kb on + strand, within BWI76_RS09910at 2084.934 kb on - strand, within BWI76_RS09910at 2084.978 kb on - strand, within BWI76_RS09910

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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2,082,522 - +0.1
2,082,679 + BWI76_RS09900 0.15 -0.3
2,082,746 + BWI76_RS09900 0.24 +2.0
2,082,824 + BWI76_RS09900 0.34 +0.1
2,082,824 + BWI76_RS09900 0.34 +1.1
2,083,022 + BWI76_RS09900 0.59 -2.0
2,083,086 + BWI76_RS09900 0.67 -1.1
2,083,155 - BWI76_RS09900 0.76 +1.5
2,083,381 + +0.3
2,083,462 + -2.0
2,083,470 - BWI76_RS09905 0.11 +0.5
2,083,614 + BWI76_RS09905 0.36 +0.8
2,083,622 + BWI76_RS09905 0.38 +0.9
2,083,711 + BWI76_RS09905 0.53 +0.8
2,083,830 - BWI76_RS09905 0.74 +0.2
2,083,951 - +0.4
2,083,951 - -0.6
2,084,097 + -0.6
2,084,344 + BWI76_RS09910 0.11 -6.1
2,084,382 - BWI76_RS09910 0.15 -4.1
2,084,398 + BWI76_RS09910 0.17 -3.4
2,084,445 - BWI76_RS09910 0.21 -1.0
2,084,504 + BWI76_RS09910 0.27 -2.7
2,084,518 + BWI76_RS09910 0.29 -3.0
2,084,527 + BWI76_RS09910 0.29 -5.5
2,084,527 + BWI76_RS09910 0.29 -1.7
2,084,550 - BWI76_RS09910 0.32 -5.4
2,084,579 + BWI76_RS09910 0.35 -4.8
2,084,579 + BWI76_RS09910 0.35 -4.7
2,084,579 + BWI76_RS09910 0.35 -5.4
2,084,586 + BWI76_RS09910 0.35 -5.3
2,084,586 + BWI76_RS09910 0.35 -5.9
2,084,592 - BWI76_RS09910 0.36 -2.5
2,084,594 - BWI76_RS09910 0.36 -2.8
2,084,597 - BWI76_RS09910 0.36 -3.9
2,084,615 + BWI76_RS09910 0.38 -5.8
2,084,654 + BWI76_RS09910 0.42 -6.5
2,084,662 - BWI76_RS09910 0.43 -4.0
2,084,662 - BWI76_RS09910 0.43 -2.2
2,084,686 - BWI76_RS09910 0.45 -3.1
2,084,760 + BWI76_RS09910 0.53 -4.8
2,084,761 + BWI76_RS09910 0.53 -3.0
2,084,761 + BWI76_RS09910 0.53 -6.0
2,084,761 + BWI76_RS09910 0.53 -2.4
2,084,761 + BWI76_RS09910 0.53 -4.4
2,084,761 + BWI76_RS09910 0.53 -5.6
2,084,761 + BWI76_RS09910 0.53 -5.1
2,084,761 + BWI76_RS09910 0.53 -5.7
2,084,761 + BWI76_RS09910 0.53 -4.4
2,084,761 + BWI76_RS09910 0.53 -4.9
2,084,761 + BWI76_RS09910 0.53 -5.2
2,084,761 + BWI76_RS09910 0.53 -2.8
2,084,761 + BWI76_RS09910 0.53 -3.0
2,084,761 + BWI76_RS09910 0.53 -5.3
2,084,761 + BWI76_RS09910 0.53 -5.3
2,084,768 - BWI76_RS09910 0.53 -4.1
2,084,769 - BWI76_RS09910 0.53 -1.5
2,084,769 - BWI76_RS09910 0.53 -3.2
2,084,769 - BWI76_RS09910 0.53 -3.2
2,084,769 - BWI76_RS09910 0.53 -4.2
2,084,769 - BWI76_RS09910 0.53 -1.9
2,084,769 - BWI76_RS09910 0.53 -3.5
2,084,769 - BWI76_RS09910 0.53 -5.2
2,084,769 - BWI76_RS09910 0.53 -0.1
2,084,769 - BWI76_RS09910 0.53 -4.0
2,084,769 - BWI76_RS09910 0.53 -3.5
2,084,769 - BWI76_RS09910 0.53 -2.3
2,084,769 - BWI76_RS09910 0.53 -4.6
2,084,769 - BWI76_RS09910 0.53 -5.2
2,084,769 - BWI76_RS09910 0.53 -2.1
2,084,884 + BWI76_RS09910 0.65 -4.1
2,084,892 - BWI76_RS09910 0.66 -1.0
2,084,909 + BWI76_RS09910 0.67 -4.2
2,084,926 + BWI76_RS09910 0.69 -4.7
2,084,934 - BWI76_RS09910 0.70 -4.5
2,084,978 - BWI76_RS09910 0.74 -5.0

Or see this region's nucleotide sequence