Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07855

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07850 and BWI76_RS07855 overlap by 4 nucleotidesBWI76_RS07855 and BWI76_RS07860 are separated by 2 nucleotides BWI76_RS07850: BWI76_RS07850 - putative cytosine deaminase-related metal-dependent hydrolase, at 1,665,150 to 1,666,388 _RS07850 BWI76_RS07855: BWI76_RS07855 - PucR family transcriptional regulator, at 1,666,385 to 1,667,620 _RS07855 BWI76_RS07860: BWI76_RS07860 - cytosine permease, at 1,667,623 to 1,668,885 _RS07860 Position (kb) 1666 1667 1668Strain fitness (log2 ratio) -2 -1 0 1at 1665.432 kb on - strand, within BWI76_RS07850at 1665.631 kb on - strand, within BWI76_RS07850at 1665.681 kb on - strand, within BWI76_RS07850at 1665.762 kb on + strand, within BWI76_RS07850at 1665.921 kb on + strand, within BWI76_RS07850at 1666.045 kb on + strand, within BWI76_RS07850at 1666.548 kb on + strand, within BWI76_RS07855at 1666.669 kb on + strandat 1667.291 kb on - strand, within BWI76_RS07855at 1667.622 kb on - strandat 1667.700 kb on + strandat 1667.700 kb on + strandat 1667.700 kb on + strandat 1667.887 kb on - strand, within BWI76_RS07860at 1668.228 kb on + strand, within BWI76_RS07860at 1668.508 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,665,432 - BWI76_RS07850 0.23 +0.4
1,665,631 - BWI76_RS07850 0.39 +0.3
1,665,681 - BWI76_RS07850 0.43 -1.0
1,665,762 + BWI76_RS07850 0.49 +0.9
1,665,921 + BWI76_RS07850 0.62 -0.9
1,666,045 + BWI76_RS07850 0.72 -1.2
1,666,548 + BWI76_RS07855 0.13 -1.2
1,666,669 + +1.2
1,667,291 - BWI76_RS07855 0.73 -2.0
1,667,622 - -1.1
1,667,700 + -0.2
1,667,700 + -0.9
1,667,700 + -0.4
1,667,887 - BWI76_RS07860 0.21 +0.1
1,668,228 + BWI76_RS07860 0.48 -0.4
1,668,508 - +0.6

Or see this region's nucleotide sequence