Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07595 and BWI76_RS07600 are separated by 182 nucleotides BWI76_RS07600 and BWI76_RS07605 are separated by 186 nucleotides BWI76_RS07605 and BWI76_RS07610 are separated by 49 nucleotides
BWI76_RS07595: BWI76_RS07595 - putative oxidoreductase, at 1,608,243 to 1,609,007
_RS07595
BWI76_RS07600: BWI76_RS07600 - aspartate aminotransferase family protein, at 1,609,190 to 1,610,527
_RS07600
BWI76_RS07605: BWI76_RS07605 - N-acetyltransferase GCN5, at 1,610,714 to 1,611,409
_RS07605
BWI76_RS07610: BWI76_RS07610 - choline dehydrogenase, at 1,611,459 to 1,613,123
_RS07610
Position (kb) 1609
1610
1611 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1608.249 kb on - strand at 1608.347 kb on - strand, within BWI76_RS07595 at 1608.352 kb on + strand, within BWI76_RS07595 at 1608.570 kb on - strand, within BWI76_RS07595 at 1608.873 kb on - strand, within BWI76_RS07595 at 1609.040 kb on + strand at 1609.215 kb on - strand at 1609.287 kb on + strand at 1609.588 kb on + strand, within BWI76_RS07600 at 1609.588 kb on + strand, within BWI76_RS07600 at 1609.588 kb on + strand, within BWI76_RS07600 at 1609.596 kb on - strand, within BWI76_RS07600 at 1609.779 kb on - strand, within BWI76_RS07600 at 1610.576 kb on + strand at 1610.586 kb on + strand at 1610.697 kb on + strand at 1610.795 kb on + strand, within BWI76_RS07605 at 1610.827 kb on + strand, within BWI76_RS07605 at 1610.872 kb on - strand, within BWI76_RS07605 at 1610.956 kb on + strand, within BWI76_RS07605 at 1611.450 kb on + strand at 1611.458 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 1,608,249 - -1.0 1,608,347 - BWI76_RS07595 0.14 +1.1 1,608,352 + BWI76_RS07595 0.14 +0.4 1,608,570 - BWI76_RS07595 0.43 -1.7 1,608,873 - BWI76_RS07595 0.82 -1.3 1,609,040 + +0.7 1,609,215 - +0.3 1,609,287 + -0.1 1,609,588 + BWI76_RS07600 0.30 -1.6 1,609,588 + BWI76_RS07600 0.30 -0.3 1,609,588 + BWI76_RS07600 0.30 -1.6 1,609,596 - BWI76_RS07600 0.30 -2.2 1,609,779 - BWI76_RS07600 0.44 -0.1 1,610,576 + +0.4 1,610,586 + +0.7 1,610,697 + -0.5 1,610,795 + BWI76_RS07605 0.12 +0.6 1,610,827 + BWI76_RS07605 0.16 +0.5 1,610,872 - BWI76_RS07605 0.23 -4.5 1,610,956 + BWI76_RS07605 0.35 -2.6 1,611,450 + -0.7 1,611,458 - +0.2
Or see this region's nucleotide sequence